Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02090 ATGGAGAACTCGGAGCTGTACCAATTCCTTGCCAGAAACGGTTCCTTCTTCAACGCCGCCGCACCTTGCTACAGCTATGGCTTACCTTCAGCAACCACAGCGATGCAGAGCTTTTGTAGTAGTTCCTCTTATTACCCCTTGGAAGTCTCCGAAATAACCGATACAACACAGCAGGATAGAGCCCTCACCGCTTTGAAGAACCACAAAGAGGCTGAGAAGAGGAGGAGGGAGAGAATCAATTCCCACCTCGATAAGCTTCGCACTCTTCTTCCTTGCAATTCTAAGACAGACAAGGCTTCTCTCCTTGCAAAGGTTGTCCAAAGAGTGAAGGAGCTCAAACAGCAAACCTCAGAAATAACCGAACTAGAAACCGTTCCTTCTGAGACGGACGAAATCACTGTCCTCTCAACCACCGCCAGTGGCAGCGAATACGGTGTAGGCGGACGGCTGATATTCAAAGCCTCCTTATGCTGTGAAGACCGTTCCGATCTCATCCCTGACATAATTGAGGTCCTCAAATCCCTACATCTGAAAACCCTCAAAGCAGAAATGGCAACGCTCGGAGGAAGAACCAGGAACGTGCTTATTGTCGCCGCCGACAAGGACCACAGCATAGAGTCAACCCATTTCCTGCAGAATGCATTGAAATCCTTGATAGAACGTTCCGATTCTTGCGACAGGTCGAAACGGCGCCGTGTAATAGACCGTAAAATGATGGTCTA 722 0.4903 MENSELYQFLARNGSFFNAAAPCYSYGLPSATTAMQSFCSSSSYYPLEVSEITDTTQQDRALTALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTTASGSEYGVGGRLIFKASLCCEDRSDLIPDIIEVLKSLHLKTLKAEMATLGGRTRNVLIVAADKDHSIESTHFLQNALKSLIERSDSCDRSKRRRVIDRKMMV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02090 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Bva04g02090 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 124 IPR036638 GO:0046983
Bva04g02090 240 SMART finulus 69 118 IPR011598 GO:0046983
Bva04g02090 240 CDD bHLH_AtAIG1_like 58 134 - -
Bva04g02090 240 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Bva04g02090 240 Gene3D - 58 124 IPR036638 GO:0046983
Bva04g02090 240 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 3 239 - -
Bva04g02090 240 CDD ACT_UUR-ACR-like 155 222 - -
Bva04g02090 240 PANTHER TRANSCRIPTION FACTOR BHLH30 3 239 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02090 Bva-Chr4 20445597 20447249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02090 6 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 62.946 2.73e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02090 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02090 - K22484 qsu:111998080 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02090 04 20445597 20447249 Bva13g02509 13 18855803 18857389 BWGD
Bva04g02090 04 20445597 20447249 Bva04g02090 04 20445597 20447249 ECH