Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02085 ATGGCATCTAGTTCTATGTCATCCTCTGGTTCATGGTCAGCAAAGGACAACAAAGCTTTTGAAAGGGCTCTAGCTGTGTATGACAAGGACACCCCAGACCGTTGGCACAATGTTGCAAAAGCTGTTGGTGGTAAAACCCCTGAGGAAGTGAAAAGGCACTATGAGCTCCTTGTGCGAGACGTAAGGCACATTGAGTCAGGCCATGTGCCCTTCCCCAACTACAGAAACGGCGGAGGAAGATA 242 0.4917 MASSSMSSSGSWSAKDNKAFERALAVYDKDTPDRWHNVAKAVGGKTPEEVKRHYELLVRDVRHIESGHVPFPNYRNGGGR 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02085 80 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Bva04g02085 80 CDD SANT 18 58 IPR001005 -
Bva04g02085 80 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Bva04g02085 80 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Bva04g02085 80 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 77 IPR044636 GO:0003700
Bva04g02085 80 Gene3D - 2 71 - -
Bva04g02085 80 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 77 - -
Bva04g02085 80 SUPERFAMILY Homeodomain-like 4 60 IPR009057 -
Bva04g02085 80 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02085 Bva-Chr4 20415440 20415682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g02085 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02085 - - vra:106761815 145.206