Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02084 ATGGCCACCAAGTCTGGGTCTCTGGACTATTGGAGAAGTTATTTTCGAACGGCAAattgtgaaatatttgatataattgaCCATGCGATCATGGTGGCTGCTGCTGATTGTCCTAAAGAGTTCAGATTGCGAAGAGATCGTATTGCTGAGATGTTGTTCTCTTGTAGATTGAATCGTTGTTTAGGGTGTGAACGAATTGACTTGGCAGTGCCTGCTGATGAGGAGGAAGATGGAGGTTGCAAGGGTGGTTTTCATAGAGATGGAGCTGAATTTGAAGCAGGAGCTAGCAAAGAAAGCAAAGTCAATAGTAGTAGAGATGATCATGTGGAGATGAACACGAACCAAGTTAGCAATTATAGCTATGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAGGAGTCTCAAATTGTTCGGGAGGTTTACAGGATCAAAGAGACTCTCAAAAACAGCGAAGAGGAGTCTGATTCAGTGCTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGCACTAACTGTGGATCTTCTAAAGGCAACTGAAATTGGAAAGGTTGTCAATCCTCTGAGAAAGCATGGATCAAAGGACATTCGCCAACTTGCACGAACTCTTATTGATGGCTGGAAAGAATTGGTAGATGAGTGGGTCAAGGCCACAGCAGCTATTGCAGCAGGCTCAGAAGGTACCCCAGATTCTGTAAATCCATCCGTAGTTGATGAAGAGGAAGGGCTTCCATCGCCTCCTCTGGAGGACATTGCTTTCATTCAAACTGCTTCAATGGAACTGTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGTGAAAACAGCATAAAACCATCTCTGGACGTGCAAAACACTGCAAGGAGAAAACCACAGACTTCCAATGATGCAAATTTCAATGCCAAGGACACTAAGAGTCagcaattaaagaaaaatgagtcTTTTAAGCTAGACAAACCAGTAACTGCCGATTCTGGCCCTGGCAGACCACCAAAATCAAGCTTGCAGCAAAAAACTAATTCGGAGCCAAAGATGCAgcaaaaaatagagaagagcACCATCCCAAAGAGGCCTATTGCTGGCCAACAAGATaaattgaagagttcaGATGATGCTGCAAAACTGGAAGCTACAAAAAGGAAACTTCAGGAGCGCTATCAACAAGCTGAAAATGcTAAGAGGCAGAGGACAATACAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGATTCCTCACAGAAATCCACATGCCAAACCCGGGAACCATAATAGGCACTGGCCTAATGGAAGAAGATA 1331 0.423 MATKSGSLDYWRSYFRTANCEIFDIIDHAIMVAAADCPKEFRLRRDRIAEMLFSCRLNRCLGCERIDLAVPADEEEDGGCKGGFHRDGAEFEAGASKESKVNSSRDDHVEMNTNQVSNYSYGEAEALTDEIEEESQIVREVYRIKETLKNSEEESDSVLFESLRRLQLMALTVDLLKATEIGKVVNPLRKHGSKDIRQLARTLIDGWKELVDEWVKATAAIAAGSEGTPDSVNPSVVDEEEGLPSPPLEDIAFIQTASMELSQFFDGMDDDGNPRQSGEFIKNRENSIKPSLDVQNTARRKPQTSNDANFNAKDTKSQQLKKNESFKLDKPVTADSGPGRPPKSSLQQKTNSEPKMQQKIEKSTIPKRPIAGQQDKLKSSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGIPHRNPHAKPGNHNRHWPNGRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02084 443 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Bva04g02084 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 442 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 279 316 - -
Bva04g02084 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 442 IPR044805 -
Bva04g02084 443 SMART TFS2_5 138 213 IPR003617 GO:0005634
Bva04g02084 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 223 IPR035441 -
Bva04g02084 443 CDD TFIIS_I 140 212 - -
Bva04g02084 443 Coils Coil 376 410 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 340 359 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 225 247 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 374 423 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 429 443 - -
Bva04g02084 443 MobiDBLite consensus disorder prediction 264 443 - -
Bva04g02084 443 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Bva04g02084 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 222 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02084 Bva-Chr4 20400901 20404978 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva04g02084 Med26 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02084 - - zju:107431544 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02084 04 20400901 20404978 Bva13g02522 13 18922637 18926337 BWGD
Bva04g02084 04 20400901 20404978 Bva04g02084 04 20400901 20404978 ECH