Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02073 aTGGCCGTCTCTCATCCCAAAGATCTCTCTGCTCATTTTGAAAAGCTGATAATCAATAATTCTGCggtgaaaagagagaagaaagatggAGTTTTCAAGTGCAAGTACTGTGAAAGAGAATTTACCAATCCACAAGCTCTTGGTGGGCATCAAAATGCCCATAGAGCAGAGCgggaaagagaaaaggagaagctATTCCCTCTATACAGATTGGGTACTAGCAGTAGGGCTAGAGCCCCTAAGCATGAACACTACTATCAGGGGCCAGCTTTTGGTTCGAGCCGAGGGTTTGGTCGGCTAGGGTTAGGAGTCCAGCCAACTTCCATGATTCGTAAGCCATCGTCTCATGCGGGGTTTGGACAAGTTGCTCACCACCGTAATGCATGGCGATCAGCAGCGGCGTATCAACTTTTTCCCACCAACCACCAACAAGAAGCTTTTCAGAGTTTTGGGCCAAGAAGCTCCTACTGGCAAAATCCAGAGGCTGCTCAAACGGAAGAGCTTGATTTGGATCTCAGGCTTGGCTTATG 530 0.4396 MAVSHPKDLSAHFEKLIINNSAVKREKKDGVFKCKYCEREFTNPQALGGHQNAHRAEREREKEKLFPLYRLGTSSRARAPKHEHYYQGPAFGSSRGFGRLGLGVQPTSMIRKPSSHAGFGQVAHHRNAWRSAAAYQLFPTNHQQEAFQSFGPRSSYWQNPEAAQTEELDLDLRLGL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02073 176 PANTHER OS02G0182300 PROTEIN 28 174 - -
Bva04g02073 176 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Bva04g02073 176 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Bva04g02073 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Bva04g02073 176 PANTHER ZINC FINGER PROTEIN JAGGED 28 174 IPR045320 GO:0003700
Bva04g02073 176 Pfam C2H2-type zinc finger 31 57 - -
Bva04g02073 176 Gene3D Classic Zinc Finger 3 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02073 Bva-Chr4 20321813 20322343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02073 17 120 C2H2 Transcription Factor Family AT5G25160 36.842 1.05e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02073 zf-C2H2_6 2.2e-06 CL0361