Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02067 atgtcaAGTAGCAGAAACACCCATTGGTGTTATAGTTGCAGGAGGCCATTTCGTCTGCGAGGGCATGATGTGGTTTGCCCCAGCTGTAATGGAGGATTTGTTCAAGAACTTAATGACATGGTGCATATAAGTCCATTGGAATTCTTTGGACcagaaaatgatgaagaacGGCACCGACAGTTTGGACTCATGGAAGCCTTCTCTGCCTTTATGAGGCATCGGTTGGCAGATAGAAGAAGTAGCCATGATATCAGGACAAGATCAAATTTGATTCCCGAACATGGTCCAGAATTTGCTCCATTATTGATCTTTGGTGGCCAGATTCCATTTAGATTGTCTGGACACGGTGGCTTCGAAGCTCTCTTTAATGAGACTCCTGGAATTGGTCTAACACGAGGCAATACAGgtgattattttattggtCCTGGTCTGGAGGAATTGTTTGAACAACTCTCTGCCAATGATCGGCGAGGCCCTCCGCCTGCTGCCAGTTCTTCAATAGATGCAATGCCTACTATCAAGATCACACAGAGGCATCTTCGTTCAGATTCACATTGTCCAGTATGCAAGGATAAATTTGAGCTTGGGTCTGAAGCAAGGCAAATGCCATGTAATCATATGTATCACTCAGATTGTATTGTCCCATGGTTGGAACAGCACAACTCTTGCCCTGTTTGCCGCCAGGAGTTGCCACCACAAGGATTGAGTAGTAACCATGGTTCGAATGGCCGAAGTAGAAGCAGTCATAGTAGCAATAGCAGTGGAAGGGAAAGCCAGAGAAGGCGGAATCCATTTTCTTATCTGTGGCCTTTCCGTTCGTCTAATTCCAGCACTAATGGAGCCGCTGGAAGCAGCTCACCAACGCCTGAGAACAACCATCAAACGGGATATTCTGGTTGGCCATTTGACTG 911 0.4468 MSSSRNTHWCYSCRRPFRLRGHDVVCPSCNGGFVQELNDMVHISPLEFFGPENDEERHRQFGLMEAFSAFMRHRLADRRSSHDIRTRSNLIPEHGPEFAPLLIFGGQIPFRLSGHGGFEALFNETPGIGLTRGNTGDYFIGPGLEELFEQLSANDRRGPPPAASSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHMYHSDCIVPWLEQHNSCPVCRQELPPQGLSSNHGSNGRSRSSHSSNSSGRESQRRRNPFSYLWPFRSSNSSTNGAAGSSSPTPENNHQTGYSGWPFD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02067 303 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Bva04g02067 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 302 - -
Bva04g02067 303 Pfam Ring finger domain 185 227 IPR001841 -
Bva04g02067 303 SMART ring_2 186 226 IPR001841 -
Bva04g02067 303 MobiDBLite consensus disorder prediction 268 303 - -
Bva04g02067 303 MobiDBLite consensus disorder prediction 234 303 - -
Bva04g02067 303 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Bva04g02067 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 302 - -
Bva04g02067 303 CDD RING-H2_RNF126_like 186 227 - -
Bva04g02067 303 SUPERFAMILY RING/U-box 166 233 - -
Bva04g02067 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 233 IPR013083 -
Bva04g02067 303 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02067 Bva-Chr4 20289965 20292031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02067 133 240 C3H Transcription Factor Family AT5G01980 44.545 1.39e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02067 04 20289965 20292031 Bva04g02067 04 20289965 20292031 ECH