Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02063 atgtttatttatacaGAAGTCGACAAAACTTTCCTCTTCCTTTTGACGGTACGCGGCGCTAATCCAACTACCGATCTCCCCTTCAGTTCACGTCCTCATTcccctctctttctctgtaaATCTGCGTTCCGAATCCAATCACACGCAAGAATCAGAAAAGAAGCTGCAATGGCATCTGATCCATGGCTCCGAGAATTTAATGAAGCATCAAAATTATCAGAAGAAGTGAAGGGTATGATTTCTGCTAAGAGTTCACTGCCTCCCTCTGGGCCAGAAACACAACGTCATCTATCAGCAGCTAGGAGAAAGATAACTATATTAAGGACCAAACTTGAAACTCTGCAGTCACTACTCTCAACACTTCCGAGCAAGCAGCAAATAAGTGGAAAAGAGATGAATCGACGCCAAGACTTGCTCACTAATTTAGGTTCCAAAACCAACCAGATGGCTACGTCTCTCAACATGTCTGGTTTTGCTAATAGAGATAGCTTGTTTGGACCTGATAAAAAGTCTGAAGAAGTCATGAACAAAGCAGCTGGCTTGGACAACCAGGGTCTTGTTGGCTTCCAAAGGCAAATCATTAAAGAACAAGATGGAGATCTTGAGAAGTTAGAGGAGACAGTTGTAAGCACAAAACACATCGCATTGGCAGTTAATGAGGAACTTGGCCTACAAACTCGACTTCTGGATAATATAGACCAGCATGTGGATTCAACAAATTCCCGCCTACAGACAGTCCAAAAGAGACTGGCCATGCTGAACAAGCGCACTAAAGGTGGTTGCTCTTGCATGATCCCGCTAATCCTTTCTATCGTCTCTCTGATAGTTGTCGCATGGTTACTGATCAAATACTTGTA 857 0.4189 MFIYTEVDKTFLFLLTVRGANPTTDLPFSSRPHSPLFLCKSAFRIQSHARIRKEAAMASDPWLREFNEASKLSEEVKGMISAKSSLPPSGPETQRHLSAARRKITILRTKLETLQSLLSTLPSKQQISGKEMNRRQDLLTNLGSKTNQMATSLNMSGFANRDSLFGPDKKSEEVMNKAAGLDNQGLVGFQRQIIKEQDGDLEKLEETVVSTKHIALAVNEELGLQTRLLDNIDQHVDSTNSRLQTVQKRLAMLNKRTKGGCSCMIPLILSIVSLIVVAWLLIKYL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02063 285 Coils Coil 236 256 - -
Bva04g02063 285 Gene3D - 193 255 - -
Bva04g02063 285 ProSitePatterns Syntaxin / epimorphin family signature. 197 236 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva04g02063 285 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 191 253 IPR000727 -
Bva04g02063 285 Pfam SNARE domain 228 279 IPR000727 -
Bva04g02063 285 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 57 279 - -
Bva04g02063 285 CDD SNARE_Qc 194 251 - -
Bva04g02063 285 SMART tSNARE_6 186 253 IPR000727 -
Bva04g02063 285 SUPERFAMILY SNARE fusion complex 182 253 - -
Bva04g02063 285 PANTHER SYNTAXIN 57 279 IPR045242 -
Bva04g02063 285 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02063 Bva-Chr4 20264812 20267625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02063 36 285 SNARE and Associated Proteins AT1G79590 58.730 8.80e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02063 K08503 - nnu:104589757 322.398