Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02061 ATGGAACGAGAACGTCTTTTGCAGAGCGGTGCTCTAAGCCGTACTCGTCCAAGTGGTCCCATGCTTCGCGGACCCACCATGCGCACCTCTTTCACTATCCCCTTAACTCGATACACTTCCCGTCTCATCGCCGCCGAGCACCGCCGGATTTTCTTCGGAGACTGCACTGAGCACCATTCGGAGGACGATTATGATCGGCCAATCGATGAAGGTATTTGCTCCTATTCCAAGCCTATTTTGGTTCTTGACCTTTTGTGGAACCTAGCCTTTGTCCTCGTCACTGCTGGGGTTCTTCTTTCTACATTGACCGAGTGCCCCTCGACCCCTTTGAGGCATTGGCTATGCGGGTATGCTTTTGAGTGTATTCTGCATATCGGTTTCGTGTATTTTGAGTATCGGAGGAGGACCAACGATTATCACGCAGCTGAGGTGGGGCCTTCATCCTCTCATCAGAGTCGGAATAGCATTATGAAGAAGTTAGAGTCTATGAACACTCTGGCATCATCTGTTTGGTGGGTCTTTGGATTTTATTGGATTATAATGGGTGGTCAAGCTCTTTTGCAAGATTGCCCCCGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGAtgtatttttcattatcttcTGCATTGGGATGGCatgcataattttctttgctttcttctgcTTCGTTCCAATAGTAGCATTAGCTTATGCcataaaaatgagagaaggTGCATCAGACGAGGATATCAGATCTCTTCCTAAATATAGGTTTAGCCAGTCAAATTTGTTGGTGATGGTTGACGATAACCAGAAGCAAGTTGTTAAAGCGAGAATGGACACAGACAATAGCAACTTTGCCAgtgaaatttctcttcatactGATGATTCTGAATGTTGCATCTGCCTTTCTCCATATGTAGATGGAACAGAACTCTATCGGCTTCCCTGCACCCACCATTTTCATTGTGGATGCATCAGCAGATGGCTTCGGACTAAAGCAACCTGCCCTCTCTGCAAATTTGATATCCTCAGAGGTGATTCATTGGTTTG 1040 0.4327 MERERLLQSGALSRTRPSGPMLRGPTMRTSFTIPLTRYTSRLIAAEHRRIFFGDCTEHHSEDDYDRPIDEGICSYSKPILVLDLLWNLAFVLVTAGVLLSTLTECPSTPLRHWLCGYAFECILHIGFVYFEYRRRTNDYHAAEVGPSSSHQSRNSIMKKLESMNTLASSVWWVFGFYWIIMGGQALLQDCPRLYWLTVVFLAFDVFFIIFCIGMACIIFFAFFCFVPIVALAYAIKMREGASDEDIRSLPKYRFSQSNLLVMVDDNQKQVVKARMDTDNSNFASEISLHTDDSECCICLSPYVDGTELYRLPCTHHFHCGCISRWLRTKATCPLCKFDILRGDSLV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02061 346 SUPERFAMILY RING/U-box 288 340 - -
Bva04g02061 346 PANTHER TARGET OF ERK KINASE MPK-1 25 346 - -
Bva04g02061 346 Pfam Ring finger domain 294 336 IPR001841 -
Bva04g02061 346 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Bva04g02061 346 SMART ring_2 295 335 IPR001841 -
Bva04g02061 346 MobiDBLite consensus disorder prediction 1 22 - -
Bva04g02061 346 CDD RING-H2_RNF111_like 294 338 - -
Bva04g02061 346 PANTHER RING-FINGER UBIQUITIN LIGASE 25 346 - -
Bva04g02061 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 343 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02061 Bva-Chr4 20259754 20262480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02061 13 343 C3H Transcription Factor Family AT1G68070 43.188 2.63e-92 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02061 - - ahf:112696795 455.292