LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g02054	ATGGGTCGGGCTCGTCTGCTTCTTTCGGATTTTATTGTGTCTTTCATGTGGATATGGTCAGGGATTCTGCTTAAGACTGTCTACAAATATTTGGATTTGGGTCATCAGCCCCATGGTGAGATTGTCAAGTGTGCCTTTTCCCTTACGAACATGTTCTTCTTTGCATTTCTGGCAAAAATTACCAATGGTGCCTCCTTCAATCCTCTCCCAGTTTTGTCTGGTTCCATTTCTGGAGATTTTAGCAGCTTCCTCTATTGCGTTGGTGCCAGGATTCCCGTTCAGGTGCTAGGATCGATTACTGGGGTTAAGCTTGTTATTGAAACTATTCCTGGAGTAGGAAGAGGACCGCGTCTGAATATAGACATCTATCGAGGTGCACTGACAGAGGGATTCCTATCATTTGCAATTGGAGTGATCTCACTTGGACTTGCCACAAAAATTCCTGGAAGTTTCTTCATGAAGACTTGGATCTCCAGTGTCTCCAAGTTAACACTTCACATACTTGGCTCTGATCTTACCGGTGGTTGCATGAACCCGGCTGCTGTAATGGGATGGGCTTATGCTCGAGGAGATCACATAACCAAGGAGCACATCTTTGTCTACTGGGTTGCCCCCATACTGGCAACCCCACTAGCAGCGTGGACGTTCAAATTGTTTGCGAGGCCAGCGAAGGAGAAAACAGGCAACAAAAGTAAATCAGATTG	704	0.4588	MGRARLLLSDFIVSFMWIWSGILLKTVYKYLDLGHQPHGEIVKCAFSLTNMFFFAFLAKITNGASFNPLPVLSGSISGDFSSFLYCVGARIPVQVLGSITGVKLVIETIPGVGRGPRLNIDIYRGALTEGFLSFAIGVISLGLATKIPGSFFMKTWISSVSKLTLHILGSDLTGGCMNPAAVMGWAYARGDHITKEHIFVYWVAPILATPLAAWTFKLFARPAKEKTGNKSKSD	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g02054	234	PANTHER	AQUAPORIN SIP2-1-RELATED	1	234	-	-
	Bva04g02054	234	Pfam	Major intrinsic protein	5	215	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva04g02054	234	Gene3D	Glycerol uptake facilitator protein.	3	233	IPR023271	-
	Bva04g02054	234	PANTHER	AQUAPORIN SIP2-1-RELATED	1	234	IPR044226	GO:0015267
	Bva04g02054	234	PRINTS	Major intrinsic protein family signature	199	219	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva04g02054	234	PRINTS	Major intrinsic protein family signature	5	24	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva04g02054	234	PRINTS	Major intrinsic protein family signature	159	181	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva04g02054	234	PRINTS	Major intrinsic protein family signature	86	105	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Bva04g02054	234	SUPERFAMILY	Aquaporin-like	4	225	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g02054	Bva-Chr4	20208451	20209827	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g02054	1	234	Major Intrinsic Protein MIP	AT3G56950	56.540	2.10e-94	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g02054	K09875		-	jre:108992606	358.221