Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02040 ATGGAGAGGAAGCGAAAGCTGGGGCCTAAATCCACCACCGAATCCATCGAACCTCCACTGaagcagcagcaacaacagCAACTAACAGAAGTGCAGGGCATACAGGAAGAGGCCCAAGAAGTTGAAGACGGAGAGAATGGGGCTGAGTACGaggaagttgaagaagaagtagaagaagaggaagaaggagaaggagaaggagaagaagaagaagaagaaggtgacGATGATGTTGCCCAAAACGCCAATGATCAGGCAGCTAAGGCTCCGTCATCTGGTAAGGATGCCGACGAAGATGAGGAGCCGATACCGAAGCTTCTGGAACCGTTCAGCAAGGAGCAAATTGTAAATCTGCTCTGCGAGGCTGCGGATAAACATCCCGACGTGGCCGATATGATTCGTAAGGTAGCTGATGAGGATCCCGTTCACCGGAAAATCTTCGTTCATGGCCTCGGATGGGACACAAATGCCGAGACCCTGATTAACGTATTCAAGCAATACGGGGAAATTGAAGATTGTAAAGCTGTATGTGATAAGATTTCAGGGAAGTCCAAGGGTTATGCTTTCATCCTGTTCAAAACACGTCGTGGGGCTCGCAATGCGCTGAAGCAACCACAGAAGAAGATTGGGAACCGGATGACGGCCTGCCAGCTGGCATCAGTTGGCCCGGTTCAACAGCCAGCCGCCGCACAACCTGCTTCGGTACCGCCGTCATCAGAGTATCCACAGAGGAAGATTTACGTGAGCAATGTTGGGGCGGATTTGGATCCTCAGAAGCTGCTCATGTTCTTCTCCAAGTATGGGGAGATAGAGGAGGGACCATTGGGGCTTGACAAGATGACTGGGAAACCAAAAGGTTTCTGTTTGTTTGTGTACAAGAGCTTTGACAGTGCCAAAAAGGCATTGGAAGAACCACACAAGGAATTTGAGGGCCATATTTTGCATTGTCAGAAAGCAATCGATGGTCCAAAACCAGGAAAGGCTCAGCATCAGCAACCCCAGAATCCTCACAGGCCCCAATTCCAGAGGAATGAGAACCCTAGCTTTGTTGGCGGGCCTGCTACTGGAGTAGGGCATTTGATGGCGCCATCGGTACCAGGAATTGCATTTAACCAGGGTGCAGCGGCTTCTCAGACACTGAATCCGGCTCTTGGGCAGGCGTTGACAGCACTACTTGCAACTCAAGGTGCTGGCTTGGGGCTGACTAATTTGTTGGGAACCCTAGGATCAGCTGCTGCGGTAAACCCAGGTGTTGCTGCTGCGGGCCATGGGGTACAGGGCGGATACGGTAACCAGTCAAATATAAGCCCTGGAGTTATTGGAGGATATTCAAACCAGGGTGGCTTGCAGGCGGCATATGCGAACCAGCAGGTGGGGCAAAGTGGATCTGGAAGAGGGCAGCATGGTGTTGGGCAGTATGGTGGCGTTGCCCCTTATATGGGGCACTA 1448 0.4869 MERKRKLGPKSTTESIEPPLKQQQQQQLTEVQGIQEEAQEVEDGENGAEYEEVEEEVEEEEEGEGEGEEEEEEGDDDVAQNANDQAAKAPSSGKDADEDEEPIPKLLEPFSKEQIVNLLCEAADKHPDVADMIRKVADEDPVHRKIFVHGLGWDTNAETLINVFKQYGEIEDCKAVCDKISGKSKGYAFILFKTRRGARNALKQPQKKIGNRMTACQLASVGPVQQPAAAQPASVPPSSEYPQRKIYVSNVGADLDPQKLLMFFSKYGEIEEGPLGLDKMTGKPKGFCLFVYKSFDSAKKALEEPHKEFEGHILHCQKAIDGPKPGKAQHQQPQNPHRPQFQRNENPSFVGGPATGVGHLMAPSVPGIAFNQGAAASQTLNPALGQALTALLATQGAGLGLTNLLGTLGSAAAVNPGVAAAGHGVQGGYGNQSNISPGVIGGYSNQGGLQAAYANQQVGQSGSGRGQHGVGQYGGVAPYMGH 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02040 482 SUPERFAMILY RNA-binding domain, RBD 143 226 IPR035979 GO:0003676
Bva04g02040 482 MobiDBLite consensus disorder prediction 36 79 - -
Bva04g02040 482 MobiDBLite consensus disorder prediction 1 101 - -
Bva04g02040 482 SMART rrm1_1 245 317 IPR000504 GO:0003723
Bva04g02040 482 SMART rrm1_1 145 217 IPR000504 GO:0003723
Bva04g02040 482 MobiDBLite consensus disorder prediction 319 355 - -
Bva04g02040 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 333 IPR000504 GO:0003723
Bva04g02040 482 Gene3D - 227 352 IPR012677 -
Bva04g02040 482 CDD RRM_RBM24_RBM38_like 244 319 - -
Bva04g02040 482 SUPERFAMILY RNA-binding domain, RBD 225 344 IPR035979 GO:0003676
Bva04g02040 482 Gene3D - 26 226 IPR012677 -
Bva04g02040 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 212 IPR000504 GO:0003723
Bva04g02040 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 314 IPR000504 GO:0003723
Bva04g02040 482 MobiDBLite consensus disorder prediction 15 34 - -
Bva04g02040 482 CDD RRM_RBM24_RBM38_like 144 219 - -
Bva04g02040 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 221 IPR000504 GO:0003723
Bva04g02040 482 PANTHER - 32 482 - -
Bva04g02040 482 Coils Coil 50 70 - -
Bva04g02040 482 MobiDBLite consensus disorder prediction 328 349 - -
Bva04g02040 482 PANTHER GEO13361P1-RELATED 32 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02040 Bva-Chr4 20147820 20151365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02040 243 361 C2H2 Transcription Factor Family AT2G19380 34.146 2.97e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02040 04 20147820 20151365 Bva04g02040 04 20147820 20151365 ECH