Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02029 ATGGCAACCAGAAAGGAAGaggaaagaaatgagaaaattataagagGTCTTATGAAGCTTCCGCCGAATCGAAGATGCATCAACTGCAATAGTTTGgGGCCACAATATGTTTGTACGAATTTTTGGACATGCGTTTGCATAACATGCAGTGGGATACATCGTGAGTTTACTCATCGGGTGAAGTCTGTATCTATGGCGAAGTTTACATCACAGGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAGTATATTTGAAAGATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGcAATGTTAACAAAATAAGGGAGTTTATAAAGAATGTATACGTGGATAGAAGATATGCTGGAGCAAGGTCCTCTGACAAGCCTCCAAGAGATATGCAGGGCCCTAGAATCCATGAAGAGGAGACAAGGCGTGCCAGTTCATATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAAGATTGGCGGTATGGAAAACAAGCAGCTGCACTGACCAGGAAGCCTGGTTCTGATAAAGGCCGTTATGAAGGGAAAATGTCCAGTTTTATCTATAGTCCTGGTCGCTTCAGTGATCATGGGACTGATGATAGATTTGCAAACGAGGGAGTTGGTCCAAGATTATCTGACTTTTCTGTATCTAGTGGAGGTGACCAATTCAAATCTGGTGTGCAGTCTCCAGAGTTTCATAAGGACATTGGGATTAGCAGTCCACCCTATCTGCATTCTAATGCCAGTTCAAGTGATGATTTATGGTCTCAGAGAACTGCATCATTGGGATCGTTAGATCAAGCATCCTTTTCATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTGTCCAAACTTCTGAATTCCTTCAGGATAAAGTGTCTGGTATTCCCCGACCATCTGCTCCTGCAAGGTCTGTTAGCTCGCATCTTCCAAGGGCACCAGTGGAACCTGAACCAATTTTGTCCTCAGCTTCTTCTGTTGATATTTTTCAGTTGCCTGCATCTTCTCAGTCTACATCAGTGGATTTGTTTCAACCCTCCGTTTCATCTACAGCTTCATCTTTGAATGAAAGTCAACCTTCACAAACTTTCCAACCTTCACCTGTAGATTTATTTGCCGAAATTTCTCAAGAGCAATCTTCTGCAAAGTCAGATGAAAAGTCACCTGAGTTGTCTATCCCCAGAGATGAAGGATGGGCAACATTTGATATGCCTGAGTGCACAGTATCTACTGTGCAGGTAGAAAATACAACTGGAGTGCCCTCAACCGATGAAACCTTCCTGGGAAGATTTAATCCATTTTCAACCTTTAATGGAGGCACGCAATGGCCATCTTCTGAAACCTCTAGTGTTCATAAATCTTCTTCAGTTTCATCTAATCCATGGCACGATGGTGTATGGAATGAAAATGAGCAAGTTGCCATCACAGCTACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTTCTCAGCTTCCTATAGAAGTCCTTAATCAGGCGTTAAATCTTCCATCAGCTGATGGTCAAATTTTGGGTTTGAGAGCTTCTGAGGGCTCGGATAATGGTGGGATGCTAGCTGTCGCCCCAGTTGTTGGATCCCATTATCATAACATTGCATCACATATTGCCAGTGGTTTACCATGTCCCTCTCCGCTTCCTCTGGGAGAGACTCAAACTAATACAATCAACCATAAATCAACTAATCCATTTGATATACCTTTTGATTCTGATATAGAGCAAAGCAATATGTTCCTGAATATGAGCTCTTTGCAAGCTGCTCTGCCAGTACCAGATGCCCAGTTGCCATCCACCTTCCACAATGGTATAGCTGAACCATGGCTCCCTCAAAATTCAGCGACCTCTTATATTTCTGCTGCAGGAGAAGGTGGTTTGACCTACATGGCTGCGCAACCACCAAGTTCTCAAATCCCGAACGTCCAAACACATGGACCGGTTGCTTCGGTTGGGGGTAATCCGTTTGCATA 2018 0.4272 MATRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTCVCITCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREVYLKDWDFQRQRLPDSSNVNKIREFIKNVYVDRRYAGARSSDKPPRDMQGPRIHEEETRRASSYHSYSQSPPYDYQYEDWRYGKQAAALTRKPGSDKGRYEGKMSSFIYSPGRFSDHGTDDRFANEGVGPRLSDFSVSSGGDQFKSGVQSPEFHKDIGISSPPYLHSNASSSDDLWSQRTASLGSLDQASFSSYNSGGLVDFFSEPVQTSEFLQDKVSGIPRPSAPARSVSSHLPRAPVEPEPILSSASSVDIFQLPASSQSTSVDLFQPSVSSTASSLNESQPSQTFQPSPVDLFAEISQEQSSAKSDEKSPELSIPRDEGWATFDMPECTVSTVQVENTTGVPSTDETFLGRFNPFSTFNGGTQWPSSETSSVHKSSSVSSNPWHDGVWNENEQVAITATNTQPWNAFEDSGSQLPIEVLNQALNLPSADGQILGLRASEGSDNGGMLAVAPVVGSHYHNIASHIASGLPCPSPLPLGETQTNTINHKSTNPFDIPFDSDIEQSNMFLNMSSLQAALPVPDAQLPSTFHNGIAEPWLPQNSATSYISAAGEGGLTYMAAQPPSSQIPNVQTHGPVASVGGNPFA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02029 672 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Bva04g02029 672 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Bva04g02029 672 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Bva04g02029 672 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Bva04g02029 672 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Bva04g02029 672 MobiDBLite consensus disorder prediction 653 672 - -
Bva04g02029 672 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Bva04g02029 672 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Bva04g02029 672 MobiDBLite consensus disorder prediction 451 473 - -
Bva04g02029 672 MobiDBLite consensus disorder prediction 122 148 - -
Bva04g02029 672 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 672 - -
Bva04g02029 672 MobiDBLite consensus disorder prediction 387 407 - -
Bva04g02029 672 MobiDBLite consensus disorder prediction 302 324 - -
Bva04g02029 672 MobiDBLite consensus disorder prediction 122 156 - -
Bva04g02029 672 CDD ArfGap_AGFG 11 121 - -
Bva04g02029 672 PANTHER ARFGAP/RECO-RELATED 1 672 IPR044820 GO:0005096
Bva04g02029 672 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02029 Bva-Chr4 20077601 20083302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02029 14 88 C2H2 Transcription Factor Family AT4G05330 35.443 3.30e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02029 K15044 - gmx:100788316 824.698