Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02005 ATGTACTCCCCTAACAGCAGTATTTTGGTCTCACCCAGTAGCTCCCGGTCGGTGACGGAGACTGTAAATGGTTCGCATAACTTTGTGATCAAAGGCTACTCTCTCGCCAAAGGGATCGGAGTCGGGAAGCACATAGCCAGCGAGAATTTCACCGTCGGAGGGTACCAGTGGGCCATTTATTTCTACCCAGATGGAAAAAATCCGGAAGACAATTCTGCGTATGTCTCAGTCTTCATTGCGCTTGCCAGCGAGGGCACTGATGTGCGGGCACTCTTCGAGCTGACTTTGGTGGACCAGAGTGGAAATGGGAAGCATAAGGTCCATAGCCACTTCGATAGATCGCTTGAGAGCGGTCCCTATACGCTCAAGTATCGTGGCAGCATGTGGGGCTACAAACGTTTTTTCAAACGAGCTCAGCTTGAGGCATCAACGTTCCTTAAGGAAGATTgcttgaaaataaattgtacTGTTGGTGTTGTGATTTCTTCCATAGATTgttcaaaattaaacacaataCATGTCCCTGAATCTGATATTGGAGTACATTTTGGCATGCTATTGGATAACGAGGAAGGATCAGATGTTACTTTCTCTGTCTCTGGGGAAAAGTTTCATGCACATAAGCTTGTATTAGCTGCCCGGTCTCCCGTATTTGGGACTGAGTTTTTGAATGAAGTTGAGGAAGATAATCATGAAGTAGTTGTTAATGACATGGAACCTAAAGTTTTCAAGGCTTTGcttcatttcatttataaagACACTCTTATCGAAGATGAAGAACTCTTCATGCTACGTTCATCGTTCTTGCCATCATTAGCTGACACATTTGCTGCGAAATTGTTAGCTGCAGCAGAAAAATATGGTTTGCCAAGACTTAAACTGATGTGTGAATCTGTACTCTGCAAAGATATATCTGTAGATTCTGTTGCTTATATTCTGGCTCTCACTGATCGTTATCACGCCACAGAATTAAAATCCATTTGTCTAAAATTTTCTGCTGAGAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTCAAGGAAAACTGCCCATTGCTGCAATCAGAACTACTAAAGACGGTGGCTGGGTGTGAGGAGGAATTTAGTGGGGAGGGAAAATGTCGAAGTGTTTGGGCTCAGTTTTCTGATGGCGGTGATACTAACGATAGGAGTGTAAGACAACAAACTTGGGAAAATGGAGTTGAGAGAAGTCAAAACTTATGGGTTCAGCTTTCTGATGGTGGTAACAATGATGGTAGAAGTCCAGGTCAAGAAGCTTG 1286 0.423 MYSPNSSILVSPSSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASENFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKEDCLKINCTVGVVISSIDCSKLNTIHVPESDIGVHFGMLLDNEEGSDVTFSVSGEKFHAHKLVLAARSPVFGTEFLNEVEEDNHEVVVNDMEPKVFKALLHFIYKDTLIEDEELFMLRSSFLPSLADTFAAKLLAAAEKYGLPRLKLMCESVLCKDISVDSVAYILALTDRYHATELKSICLKFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQNLWVQLSDGGNNDGRSPGQEA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02005 428 CDD MATH 24 157 IPR002083 GO:0005515
Bva04g02005 428 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Bva04g02005 428 SMART BTB_4 193 304 IPR000210 GO:0005515
Bva04g02005 428 Pfam BTB/POZ domain 185 302 IPR000210 GO:0005515
Bva04g02005 428 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 8 377 - -
Bva04g02005 428 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 160 IPR008974 GO:0005515
Bva04g02005 428 Gene3D - 303 377 - -
Bva04g02005 428 SUPERFAMILY POZ domain 172 302 IPR011333 -
Bva04g02005 428 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 377 IPR045005 GO:0016567
Bva04g02005 428 CDD BTB_POZ_BPM_plant 179 301 - -
Bva04g02005 428 CDD BACK_AtBPM-like 301 362 IPR034090 -
Bva04g02005 428 Gene3D Potassium Channel Kv1.1; Chain A 169 298 IPR011333 -
Bva04g02005 428 ProSiteProfiles BTB domain profile. 193 259 IPR000210 GO:0005515
Bva04g02005 428 SMART math_3 28 140 IPR002083 GO:0005515
Bva04g02005 428 SUPERFAMILY TRAF domain-like 20 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02005 Bva-Chr4 19931824 19935209 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva04g02005 BTB 1.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02005 K10523 - gmx:100809683 761.525