Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01993 ATGGACAGGCTCATAAGAATAGACCCATCAAACATTGCCCCAATCAGAGTTGAAGCTGGGCAGAAATGCCATGGTGTAGTCACCTTAGGCAATGTTATGTACACCATGCCAGTGGCATTCAGGCTTCAGCCACTGATGAAGAGCCGTTACACAGTGAAGCCTCATTCAGGGATTATATCCCCTTTAGCCTCAGTAACTTTAGAGATCGTGTATAATCTCCCACAGGGCTCTAGTCTTCCCCACTGCTTCCCTCACTGTGATGATTCCTTCCTCTTGCACAGCGTAGTAGTCCCAGGTGCAGCCATTAAAGAGCCTTCATCAATGTTTGATGCTGTGCCTAATGACTGGTTCACCACCAAAAAGAAGCAAGTTTACATTGACAGTGGCATCAAAATCATGTTTGTGGGACCAACAATTTTGGCTCAGTTAATTGCAGATGGATCTATGGATGAAATCAGAGAAGTCATGGAATGTAGTGACCCATCATGGAAAGCTGCAGATTCAAAAGACCCACAAGGCCAAACGTTGCTTCATTTGGCTATTGCTCAAAGCAGACCTGATCTTGTTCAATTACTCCTCGAATTCGAGCCTGATATAGAGGCTCCAAGCTGTTCTGGGACAACTCCACTTGAGATTGCTTCTTCCTCAGGCGAAACCTTAATAGTTGAGCTTCTATTGGCTCATAAGGCCAGCACAGAACGATCAGAGTCATCAATTTTAGGGCCAATTCACCATGCAGCCAGAGCAGGAAATGTAGAGGTTCTGAGGCTACTCTTACTCAAGGGGGCTAAAGTGGATGCCCTAACAAAAGATGGCAACACAGCCTTACACCTTGCTGTTGAGGAGCAAACAAGAGAGTGCGCTAGGCTTCTATTAGCAAACGGTGCCAGAACCGATGTTCGAAACACCAGAGAAGGTGAAACCCCTTTACACATAGCTGCAGCAATAGGCGATGAGCACATGGTTAAGCTGTTGCTGCAAAAGGGTGCCAATAAAGGTATGAGAAATGGGTCGGGGAAAACTGCATACGACGTTGCAGTAGAGAATGGCCATACCCGTCTCTTCGATGCCCTTGGATTAGGGGACAATCTTTGCTCGGCGGCGAGAAAAGGGGAAATCAGAACCATCCAGAAGCTGCTCGAGAATGGAGCAGCCATTAATGGGAGAGATCAACACTGGTGGACGGCGCTGCACAGAGCTTCGTTCAAAGGGAGAATAGATGTGGTTCGAGCTCTGCTAGACAAAGGGGTCGACGTGGATGCTAAAGAAGAAGAGGGGTACACTGCGTTGCATTGTGCTGTGGAATCAGGAAACGCAGACGTGACAGAACTTTTGGTGAAGAGGGGAGCAGATGTTGAAGCCAGAACCAATAAGGGCGTGACTCCGATACAAATAGCAGAGTCGCTGCACTATGCAGGGATCACAAGGATACTCGTCAATGGCGGGGCCAGTAGGGAGATTTCGGGTCAGATTCCAGCCATGGCTAAAATTCCATTGCGGAATAAGATGGAAGCTGGCGGGAcaataaagaagaagataacTAGAAACAGAGGGCTTCGGAGTAACTTTGATCGAAAATCAGCAGCTTTGGCTGTGCTTTA 1601 0.4722 MDRLIRIDPSNIAPIRVEAGQKCHGVVTLGNVMYTMPVAFRLQPLMKSRYTVKPHSGIISPLASVTLEIVYNLPQGSSLPHCFPHCDDSFLLHSVVVPGAAIKEPSSMFDAVPNDWFTTKKKQVYIDSGIKIMFVGPTILAQLIADGSMDEIREVMECSDPSWKAADSKDPQGQTLLHLAIAQSRPDLVQLLLEFEPDIEAPSCSGTTPLEIASSSGETLIVELLLAHKASTERSESSILGPIHHAARAGNVEVLRLLLLKGAKVDALTKDGNTALHLAVEEQTRECARLLLANGARTDVRNTREGETPLHIAAAIGDEHMVKLLLQKGANKGMRNGSGKTAYDVAVENGHTRLFDALGLGDNLCSAARKGEIRTIQKLLENGAAINGRDQHWWTALHRASFKGRIDVVRALLDKGVDVDAKEEEGYTALHCAVESGNADVTELLVKRGADVEARTNKGVTPIQIAESLHYAGITRILVNGGASREISGQIPAMAKIPLRNKMEAGGTIKKKITRNRGLRSNFDRKSAALAVL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01993 533 Pfam Ankyrin repeats (3 copies) 365 455 IPR002110 GO:0005515
Bva04g01993 533 Pfam Ankyrin repeats (3 copies) 242 301 IPR002110 GO:0005515
Bva04g01993 533 Pfam Ankyrin repeats (3 copies) 167 231 IPR002110 GO:0005515
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Bva04g01993 533 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Bva04g01993 533 SUPERFAMILY PapD-like 2 150 IPR008962 -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Bva04g01993 533 Gene3D - 310 359 IPR036770 -
Bva04g01993 533 Gene3D - 430 480 IPR036770 -
Bva04g01993 533 SMART ANK_2a 425 454 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 305 334 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 338 388 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 205 234 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 458 487 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 392 421 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 271 300 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 238 267 IPR002110 GO:0005515
Bva04g01993 533 SMART ANK_2a 172 201 IPR002110 GO:0005515
Bva04g01993 533 Gene3D Immunoglobulins 1 125 IPR013783 -
Bva04g01993 533 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 533 - -
Bva04g01993 533 Pfam MSP (Major sperm protein) domain 6 109 IPR000535 -
Bva04g01993 533 Gene3D - 137 309 IPR036770 -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Bva04g01993 533 SUPERFAMILY Ankyrin repeat 167 486 IPR036770 -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 242 267 - -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 305 331 - -
Bva04g01993 533 Gene3D - 361 429 IPR036770 -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat region circular profile. 172 201 - -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Bva04g01993 533 Pfam Ankyrin repeat 306 331 IPR002110 GO:0005515
Bva04g01993 533 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Bva04g01993 533 PRINTS Ankyrin repeat signature 441 455 IPR002110 GO:0005515
Bva04g01993 533 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 533 - -
Bva04g01993 533 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01993 Bva-Chr4 19880553 19882154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01993 246 448 Ion Channels AT4G32500 31.034 1.22e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01993 - - jre:108997887 774.237