Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01989 ATGGAGATTTTTGTTGGTGGACTGGACATGAATGTTAAGGAGGAAGATATCAGgaagatttttgagaaaatgggTGAGACTGTTCGATTGACATTGGTGAGGGTTGATCTGACTGGGACAAATGATGGCTATGCACTTGTGCGGTACTCTTCTGCAGATGATGCCAGAGGGGTTTTGGACAAATATACTAAAGTCGAGATATGTGGAAGAAAATATGCTACAGCTCCTGTTGAAGGCAGCATATTAATCTACAACATTGATAAGAAGTGGAAGAATGAAGATGTCATCAAATTGTTGAAAGAGACTGGCACTGAAGGAATTGAAAAAGTCTCTTTAGTCGTCGATCCAGATAACGTAGGGCATAATCTGGGATACGGATTTGTAGAGCTTCAAACTTGCAAAGATGCTCAAAATGCTTTCGATTGCAAGAATCTCCAAAGAAAGTTGGATAAGCTCCAAAAGTGCTGCTTCCTCTTGCTAGGTTTTAATAAGCCAAATCAACCAAGAAACAACCGGAAAACTCCTGGAAAAAGTCACAGGAGAAGAAGGAGCGATATAATGGATTATAAAACTGCTGTAGCTGTACAAAGCATAAGACAGCAAGCCCATTGGATGAGGTGGCAAAAAAGATTTGGCTCAGGTCCTGTAGTTGCACTTCAACCTCACATGTTACCTACCTGGAACCATCCTTTTCCTGCGAGGGCCGGAGGTTATCATACGTATTCATATCATCCAGGATACATTAATATGCATCCATCATATCCTCAAAGGGGCTATAATCCTCTACCTGCAGATTCTAGAGGATATAATGATCATCGTCGTCCCGCTAGATCATTTTCAGGTTCAAGCTCAAGCGCTAATAATCCTCGTGGTGATGGATTGTTGGCTCGGCCTAATACCTACCATCGTCAAGGTGATTTTGATTA 926 0.4082 MEIFVGGLDMNVKEEDIRKIFEKMGETVRLTLVRVDLTGTNDGYALVRYSSADDARGVLDKYTKVEICGRKYATAPVEGSILIYNIDKKWKNEDVIKLLKETGTEGIEKVSLVVDPDNVGHNLGYGFVELQTCKDAQNAFDCKNLQRKLDKLQKCCFLLLGFNKPNQPRNNRKTPGKSHRRRRSDIMDYKTAVAVQSIRQQAHWMRWQKRFGSGPVVALQPHMLPTWNHPFPARAGGYHTYSYHPGYINMHPSYPQRGYNPLPADSRGYNDHRRPARSFSGSSSSANNPRGDGLLARPNTYHRQGDFD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01989 308 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 2 148 - -
Bva04g01989 308 SMART rrm1_1 2 75 IPR000504 GO:0003723
Bva04g01989 308 SMART rrm1_1 80 159 IPR000504 GO:0003723
Bva04g01989 308 SUPERFAMILY RNA-binding domain, RBD 3 144 IPR035979 GO:0003676
Bva04g01989 308 Gene3D - 1 79 IPR012677 -
Bva04g01989 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 89 IPR000504 GO:0003723
Bva04g01989 308 CDD RRM_SF 3 71 - -
Bva04g01989 308 MobiDBLite consensus disorder prediction 276 290 - -
Bva04g01989 308 MobiDBLite consensus disorder prediction 258 308 - -
Bva04g01989 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 150 IPR000504 GO:0003723
Bva04g01989 308 Gene3D - 80 155 IPR012677 -
Bva04g01989 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 71 IPR000504 GO:0003723
Bva04g01989 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 145 IPR000504 GO:0003723
Bva04g01989 308 PANTHER SYNCRIP, ISOFORM Q 2 148 - -
Bva04g01989 308 CDD RRM_SF 81 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01989 Bva-Chr4 19858232 19860217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01989 3 144 Eukaryotic Initiation Factors Gene Family AT2G23350 28.947 1.83e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01989 - - jcu:105632601 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01989 04 19858232 19860217 Bva04g01989 04 19858232 19860217 ECH