Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva04g01979 | ATGAACGATCTTCTATCGGAATCATTTGAGATCCCAAGGGGTCAAGGAGTCGGAGATATTGAGTTAGGAGAGTATGGTCGAAATTCCGGAGAACTGGGCTTGgacaatttcttcaaaaagGTTCAAGAACTTGATAGACAATATGCGAAACTGGATCAACTTCTGAAGAAGCTTCAGGATGCACATGAGGAGTCCAAAGCTGTCACAAAGGCTCCCGCCATGAAAGCTATTAAGCAAAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAATTGCCCATCatttaaagacaaaaattgaagaacttGATAAAGAGAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGATCTGGCGTTGACCGGTCAAGAACAGCAACAACCATtgcCTTAAAGAAGAAACTGAAGGACAAGTTGGCTGAATTTCAGTCCTTGCGGGAAGCTATTCATCAGGAACATCGTGAAGTTGTTGAGAGACGTGTCTTTACAGTAACGGGCACAAGAGCTGACGAGGAgACTATTGACAGACTAATTGAAACTGGAGATAGCGAACAAATTTTCCAGAAGGCAATTCGGGAACAAGGACGAGGCCAGATAATGGACACTCTGGCAGAAATTCAAGAGCGACACACTGCAGTCAGAGAAGTAGAGAGGAAGCTTCTTGATTTACAACAGATATTTCTGGACCTGGCGGTGTTAGTAGAAGCACAAGGGGACATGCTTGACAATATCGAAACACAGGTCTCAAGTGCAGTAGATCATGTGCAGCAAGGTAATACCGCCCTCATGAAGGCAAAGAAGCTGCAGAAGAATTCAAGAAAATGGATGTGCATTGCAATCATCATTCTTCTCATTATTGTTGCAGTCATCGTTGTTGGTGTCATCAAACCATGGGTTACCAAAAAGGGTGCTTA | 917 | 0.4144 | MNDLLSESFEIPRGQGVGDIELGEYGRNSGELGLDNFFKKVQELDRQYAKLDQLLKKLQDAHEESKAVTKAPAMKAIKQRMEKDVDEVKKIAHHLKTKIEELDKENLANRQKPGCGKGSGVDRSRTATTIALKKKLKDKLAEFQSLREAIHQEHREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHTAVREVERKLLDLQQIFLDLAVLVEAQGDMLDNIETQVSSAVDHVQQGNTALMKAKKLQKNSRKWMCIAIIILLIIVAVIVVGVIKPWVTKKGA | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva04g01979 | 305 | Pfam | SNARE domain | 240 | 292 | IPR000727 | - | |
| Bva04g01979 | 305 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020 | |
| Bva04g01979 | 305 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020 | |
| Bva04g01979 | 305 | Gene3D | - | 31 | 158 | - | - | |
| Bva04g01979 | 305 | PANTHER | SYNTAXIN | 3 | 297 | IPR045242 | - | |
| Bva04g01979 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Bva04g01979 | 305 | PANTHER | - | 3 | 297 | - | - | |
| Bva04g01979 | 305 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020 | |
| Bva04g01979 | 305 | Gene3D | - | 197 | 297 | - | - | |
| Bva04g01979 | 305 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
| Bva04g01979 | 305 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
| Bva04g01979 | 305 | Coils | Coil | 78 | 105 | - | - | |
| Bva04g01979 | 305 | Coils | Coil | 34 | 71 | - | - | |
| Bva04g01979 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
| Bva04g01979 | 305 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
| Bva04g01979 | 305 | Coils | Coil | 133 | 153 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva04g01979 | Bva-Chr4 | 19805425 | 19810993 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva04g01979 | 1 | 305 | SNARE and Associated Proteins | AT3G03800 | 73.529 | 2.32e-156 | 437 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva04g01979 | K08486 | - | gmx:100306329 | 486.878 |