Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01977 ATGAGAGCTCCATCATCGTCAACAACGAGCAAGAGAACGCCATGTTGTAGCAAGGTTGGGATTAAGAGAGGACCATGGACGCCGGAGGAAGATGAGATTTTGGCCAATTTTGTCCAGAAGGAAGGCCCAGGACGGTGGCGAACGCTGCCGAGACGGGCTGGGCTACAGCGCTGCGGGAAGAGTTGCCGCCTACGGTGGATGAATTATCTTCGCCCCTCTGTGAAGAGAGGCCATATTGGTCCTGATGAGGAAGATCTCATCCTTCGCCTCCATCGCTTACTCGGTAACAGGTGGTCCTTGATAGCTGGAAGAATACCAGGAAGGACAGACAATGATATCAAGAACTATTGGAATACCCATCTTAGCAAGAAGCTCATAAGCCAAGGCATAGACCCAAGGACCCACAAGCCATTAATCATTCAAGATAACAACATTCCCAATTTCCAGAGAACATCAAACACTCGTGCAATCCCTCAAACAAATAGTACTACTCCTGTTGTACAAAGTCACAGCAACAACTACCAAATAAATGCTATTGATCACAACAGTACTGGGAAGCTGCTGAGTCAGAATATAGAAGGGAATAACAGTAGCAAGAATATTAATGGGCCAAGCTGCGAGCATGTGGTTGGGATGGGGCGAGTTGAAGTGAAGCATGATGATGACAAGAATATTGGCAGCCAGGAAGATAGTTTCTCTTCATTTCTGGATTCTTGGATGAATAATGACAATGGAGTCGGCAATATTGATCAGCAGATGCAGGATGTGCTTGCTGCGAGTTCTCCCATGCAATCTTTCAACCTTGCCTTCTGGGAAACTGCAGAACTCAAATGTCCAATGGATAATTTATGGGATGATCATCATCAGTATGGCTCAACGAATCACTCAACGTA 893 0.4614 MRAPSSSTTSKRTPCCSKVGIKRGPWTPEEDEILANFVQKEGPGRWRTLPRRAGLQRCGKSCRLRWMNYLRPSVKRGHIGPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNDIKNYWNTHLSKKLISQGIDPRTHKPLIIQDNNIPNFQRTSNTRAIPQTNSTTPVVQSHSNNYQINAIDHNSTGKLLSQNIEGNNSSKNINGPSCEHVVGMGRVEVKHDDDKNIGSQEDSFSSFLDSWMNNDNGVGNIDQQMQDVLAASSPMQSFNLAFWETAELKCPMDNLWDDHHQYGSTNHST 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01977 297 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Bva04g01977 297 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 8 283 - -
Bva04g01977 297 Gene3D - 23 75 - -
Bva04g01977 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 283 - -
Bva04g01977 297 Gene3D - 80 157 - -
Bva04g01977 297 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Bva04g01977 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Bva04g01977 297 SMART sant 75 123 IPR001005 -
Bva04g01977 297 SMART sant 22 72 IPR001005 -
Bva04g01977 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Bva04g01977 297 CDD SANT 81 121 IPR001005 -
Bva04g01977 297 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Bva04g01977 297 CDD SANT 25 70 IPR001005 -
Bva04g01977 297 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Bva04g01977 297 Pfam Myb-like DNA-binding domain 80 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01977 Bva-Chr4 19798719 19800024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01977 8 264 MYB Transcription Factor Family AT3G13540 52.713 4.10e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g01977 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01977 K09422 - qsu:112003883 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01977 04 19798719 19800024 Bva04g01977 04 19798719 19800024 ECH