Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01975 ATGGAAATTCAATTCCAGCAACCAAGGCTGTACCGAAAAGCAAGCATTCCAATCAGCAAAGGAGGCAAATTCAAAGGAAGAAACCGAAACAAAACCAGCAATACAAACAAGTTTGTTGGGGTGAGACAAAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATCAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAAGCAGCTAGAGCATATGATGAAGCTGCATGCCTTCTTCGTGGCTCCAATACTCGCACCAACTTCATTACACATGTGTCCTTGGATTCTCCTCTTGCTTCTCGGATCCGAAATCTGCTTAACAGCAGGAAAGGAACCAAACAAGAACAAGAGGTGGATGCTTCTGCTTCTACAGTAAGCAACACAAGCAGCACTAGCACTAGTTCAAGTTCTAGTTCCAGCAATAATGAAAACAGTGGCAAATCTCCTTCTATAGAGACAATTCAAGACACAAAGTTGTTTGATGATGCATATAGACCAGATTTGAGCAATTGCAGGGACGAATTTGAGGCAGGATTCAAATCCAATCCTTCATGGGGTTTTGGAACTATGTTTGATAGTTTTCCTTTCACTCAAGCACTGGATATGCCAAAGACTGATGGTCTGCTTGATACAGCTGACATGGAGCTCTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGATTGCAAGAGTATATGCAAACAGTTCAGGACTCTAGTGAAGCTCTATGGGATCTTCCACCCTTATGCTCATTGTTCTACGAAATTGATGTTTACCTGCCCCGGGGACCCAAAGGCTCCAGATCCTCATTTCAATCCATTCAAGAAGATCACGGAGCTCGTTCTGATGATGAGCGTCATGCTGGGGATTTGGGTAACATAGTCGCAGGCCCAGATGGtatttgttgctttatttGCTCCACATATTCTTTGATATTAAGTACAAAATCCATACATGGGAGAGCAATTGTTGTGCATGCTGATCCTGATGATTTAGGCCGAGGTAAGGTTTA 1055 0.4246 MEIQFQQPRLYRKASIPISKGGKFKGRNRNKTSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNSRKGTKQEQEVDASASTVSNTSSTSTSSSSSSSNNENSGKSPSIETIQDTKLFDDAYRPDLSNCRDEFEAGFKSNPSWGFGTMFDSFPFTQALDMPKTDGLLDTADMELSEFERMKVERQISASLYAINGLQEYMQTVQDSSEALWDLPPLCSLFYEIDVYLPRGPKGSRSSFQSIQEDHGARSDDERHAGDLGNIVAGPDGICCFICSTYSLILSTKSIHGRAIVVHADPDDLGRGKV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01975 351 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 Pfam Copper/zinc superoxide dismutase (SODC) 283 348 IPR001424 GO:0006801|GO:0046872
Bva04g01975 351 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 PRINTS Cu-Zn-superoxide dismutase family signature 344 351 IPR001424 GO:0006801|GO:0046872
Bva04g01975 351 PRINTS Cu-Zn-superoxide dismutase family signature 319 341 IPR001424 GO:0006801|GO:0046872
Bva04g01975 351 PRINTS Cu-Zn-superoxide dismutase family signature 301 310 IPR001424 GO:0006801|GO:0046872
Bva04g01975 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 255 - -
Bva04g01975 351 MobiDBLite consensus disorder prediction 122 160 - -
Bva04g01975 351 SUPERFAMILY Cu,Zn superoxide dismutase-like 283 349 IPR036423 GO:0006801|GO:0046872
Bva04g01975 351 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 MobiDBLite consensus disorder prediction 279 300 - -
Bva04g01975 351 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 19 255 - -
Bva04g01975 351 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Bva04g01975 351 Gene3D Superoxide dismutase, copper/zinc binding domain 277 351 IPR036423 GO:0006801|GO:0046872
Bva04g01975 351 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Bva04g01975 351 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Bva04g01975 351 MobiDBLite consensus disorder prediction 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01975 Bva-Chr4 19786257 19788266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01975 23 267 AP2-EREBP Transcription Factor Family AT5G19790 44.048 6.03e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g01975 Sod_Cu 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01975 K09286 - gmx:100796898 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01975 04 19786257 19788266 Bva03g00150 03 973904 974695 BWGD
Bva04g01975 04 19786257 19788266 Bva04g01975 04 19786257 19788266 ECH