Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01960 ATGGATGTTTGCCGGAATATATCAGTTTCCGGTGAATACCAGCAAGAACAGGTCCTCTCTCCTTCTTGCTCAAAGCGTTCTAACTTCTCAAGCAGCCTCGACGACCTCTTCTCTGCTCAGAACACTGAAGTGGATGTTAGCTTGGAATGGCTGTCAGTGTTTGTGGAAGACTGTTTTTCCAGCCAAGCAAGTCTGTTGGCACCTTGTGATGTTCAAGCTACAACTACGAGCACAAGCTCTAAACCCTCACTGCAGAGTCCCGAGCAAAAGCCCTCTTCTCtgcaaaattttgttgtgCCCGGAAAAGCcagaagcaaaaggaaaaggctTTCGGCCCCAAAAAGCAAAGACGACGCTTTAAGCGTTTGGTCTCAGCATTTAAACCCACAAAATGAAGCCTTGAATTCAGACCCTCCACTTCTGAAACAGGCCTATTGGTTGGCTGACAGTGAACTGATTGTccccaaaaaggaaaaggagcaAGCAATTAGcaaagaagcagaagaagtGGAGATTGTGAACAAGGAGAGCTTGGAGAACAGTGAGAATAGCAATGGGCAGCAGCATCCAATGCCAAGGAGGTGCAGCCATTGCTTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTTTGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGCTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTGAGCTACTTACATTCCAACTCCCACAAGAAAGTCATGGAGATGAGAATGGCTTTTCTCTCTTCTAGTCCTAATGACCACTA 806 0.4367 MDVCRNISVSGEYQQEQVLSPSCSKRSNFSSSLDDLFSAQNTEVDVSLEWLSVFVEDCFSSQASLLAPCDVQATTTSTSSKPSLQSPEQKPSSLQNFVVPGKARSKRKRLSAPKSKDDALSVWSQHLNPQNEALNSDPPLLKQAYWLADSELIVPKKEKEQAISKEAEEVEIVNKESLENSENSNGQQHPMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAFLSSSPNDH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01960 268 CDD ZnF_GATA 194 241 IPR000679 GO:0006355|GO:0043565
Bva04g01960 268 ProSiteProfiles GATA-type zinc finger domain profile. 189 225 IPR000679 GO:0006355|GO:0043565
Bva04g01960 268 SMART GATA_3 189 243 IPR000679 GO:0006355|GO:0043565
Bva04g01960 268 Coils Coil 156 176 - -
Bva04g01960 268 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 265 - -
Bva04g01960 268 PANTHER GATA TRANSCRIPTION FACTOR 1 265 - -
Bva04g01960 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 253 - -
Bva04g01960 268 MobiDBLite consensus disorder prediction 100 119 - -
Bva04g01960 268 Gene3D - 185 255 IPR013088 GO:0006355|GO:0008270
Bva04g01960 268 ProSitePatterns GATA-type zinc finger domain. 195 220 IPR000679 GO:0006355|GO:0043565
Bva04g01960 268 Pfam GATA zinc finger 195 229 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01960 Bva-Chr4 19718766 19720062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01960 48 257 C2C2-Gata Transcription Factor Family AT4G32890 41.743 1.58e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva04g01960 GATA 6.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01960 - - gmx:100812088 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01960 04 19718766 19720062 Bva03g00171 03 1066000 1067511 BWGD
Bva04g01960 04 19718766 19720062 Bva04g01960 04 19718766 19720062 ECH