Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01957 ATGGAGAATGCAATGGATGGTGGGCATTGGTGCAACACATGCTCTAAATTGGTGAATCCAATAATTGATGATGTGAACAAGTGTCCATTATGCGGGACAGAGTTTGTGGAGGCAATGAGCAGCAGCAGCACAAGAGACCAGAACGATGGCATTGATTTAAGATCAGCCTTTGTGTTCTCTGTTTATGCTCCTATCTTTCTTGGCTTGATGAGTGCTTTTGGCCCAAGCATTGCATCACAAGAATatagcagcagcagcagtaGGGGAAGCAACCCTTCAGGGCAAGAGGAAGAGGTTGAACAAGAGCTTCAACTAGTCCTcagaagaaggagaaacaCTTTAACTTCTATGATTCGTTTCTTTCGTGGTCTCCAAGTTAGGCAGGTGTCTGAATATGAAAACCCAGAAAGAGAAAGCAACAGGAGTATCATTGTTATAGATCCATTCAATGAAGAGGCCATGATCCTAAGAGGCTCTTCTGTCTTGAGCCAAACGAGGAGCTCTTTAGGTGATTTTCTGGTAGGACCTGGTTTTGATTTAGTCCTTCATCATTTTGCACAGAATGATTCCAGAGCAAATGTTAACCCTCCAGCGCAAAAGGCAGCAATAGAAGCAATGCCTAGTGTGGCTATTGAGGAGCATTTGCAATGCACGGTGTGTTTGGAGGATCTTGAGATTGGGAACCAAGTTAAAGAGATGCCTTGTAAGCATAAATTCCACGAGGATTGCATTGTGTCATGGCTAAAACTCCATAGTTCTTGCCCAGTTTGCAGGTTTCGGATGCCATCTGATGATTCAATAGTAGAAACCAGTTTTAACAGAAACGAAGGAAATCAATATAGTCACCAAGGCAGAGATagagaagagagaatgaaTCAAGCAACAAGAAACTGGCTTCCTTTACTTAGCCCATTTGATAACTTTCCTCCTTCCCCTTG 938 0.4072 MILRGSSVLSQTRSSLGDFLVGPGFDLVLHHFAQNDSRANVNPPAQKAAIEAMPSVAIEEHLQCTVCLEDLEIGNQVKEMPCKHKFHEDCIVSWLKLHSSCPVCRFRMPSDDSIVETSFNRNEGNQYSHQGRDREERMNQATRNWLPLLSPFDNFPPSP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01957 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 111 IPR013083 -
Bva04g01957 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 157 - -
Bva04g01957 159 SMART ring_2 64 104 IPR001841 -
Bva04g01957 159 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 12 157 - -
Bva04g01957 159 SUPERFAMILY RING/U-box 52 111 - -
Bva04g01957 159 Pfam Ring finger domain 63 105 IPR001841 -
Bva04g01957 159 ProSiteProfiles Zinc finger RING-type profile. 64 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01957 Bva-Chr4 19701093 19701572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01957 36 126 C3H Transcription Factor Family AT1G26800 50.000 3.14e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01957 K11982 - var:108345442 193.741