Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01955 ATGCAGGCTCAAACAGAGATAAACCGTGATAGCCGTTTGAATCGAGAAAAAGTTGCACTCATCAGAAAAGAAAGCATGTATTATCATCAGCAACAAGAAGTGAAGAACATTCACTCTTCGAGGATGGCGAAGCCAAATCCTGCTGAGAGACATATATTCCTGCAAGGTGGGAATGCTTCTGGAAACTCAGGACTTGTCCTCTCGACTGATGCTAAGCCTAGATTAAAATGGACTCCAGATCTCCATGAACGGTTTCTTGAAGCAGTAAATCAACTAGGAGGAGCAGACAAGGCTACGCCTAAATTAGTGTTGAAACTTATGGGGATTCCGGGACTTACACTATACCACTTAAAGAGTCACCTACAGAAGTACAGACTCAGTAAAAATCTGCATGGACAGGCCAATAGTGTCACCAATAAAAGctATGCAGCAGGCAGAACGACAGAAGAAATTGGGATGCATATGAATAATTCAAACCAGCCAAACAAGAACTCAAAAATAAACGAGGCACTGACAATGCAAATTGAAGTGCAGAGAAGGCTACATGAGCAGCTTGAGGTACAAAGACACTTGCAGATGCGCATAGAGGCTCAAGGAAAGTACCTTCAGGCAGTGCTGGAAAAGGCACAAGAGACACTAAGGAGACCAAATTTAGGAACAATAGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGCATCCAAAGTATCCACTCAATGCTTGGACTCTTCATTTTCAGAGCTGAGAAAATTACATGCATTCTGGCCTCAGCAAAGAGACCAAGGGCTTGAATCAGAGGCCACGACCACTGATTGTTCAATGATTAATGGCTCTCCATTCTTAGTTTCTGGAGATGGAGTTAAAGAAGAACCTCTTTCGCTCAAGTCTCATCTATCGCTTGGTGATGACTTCAAGGAGGATATGGTGTTTCTTTCCTCATTAAATGATggtgcagaaaaagaaaaattttcgcCAGGAAGAATGTCAAGCCACATATCCATGGAAATTGGAAGACGACCTGTTCCAAGAGAAGatttaaaggaagaaaataggCAAGTGCCAGTTAAACAGAACCGTGAAAGAAGTTGTCAAGATTATAGACTGCCTGCCCCGAAAGCAAAACTGGATTTAAATGCCCATGATGCTTCTTCTCGGGCCAAACACTTTGACTTGAATGGTTTCAGCTGGAACTG 1196 0.4139 MQAQTEINRDSRLNREKVALIRKESMYYHQQQEVKNIHSSRMAKPNPAERHIFLQGGNASGNSGLVLSTDAKPRLKWTPDLHERFLEAVNQLGGADKATPKLVLKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANSVTNKSYAAGRTTEEIGMHMNNSNQPNKNSKINEALTMQIEVQRRLHEQLEVQRHLQMRIEAQGKYLQAVLEKAQETLRRPNLGTIGLEAAKVQLSELASKVSTQCLDSSFSELRKLHAFWPQQRDQGLESEATTTDCSMINGSPFLVSGDGVKEEPLSLKSHLSLGDDFKEDMVFLSSLNDGAEKEKFSPGRMSSHISMEIGRRPVPREDLKEENRQVPVKQNRERSCQDYRLPAPKAKLDLNAHDASSRAKHFDLNGFSWN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01955 398 MobiDBLite consensus disorder prediction 343 370 - -
Bva04g01955 398 Coils Coil 168 188 - -
Bva04g01955 398 SUPERFAMILY Homeodomain-like 71 127 IPR009057 -
Bva04g01955 398 MobiDBLite consensus disorder prediction 343 368 - -
Bva04g01955 398 Pfam Myb-like DNA-binding domain 74 125 IPR001005 -
Bva04g01955 398 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 72 127 IPR006447 GO:0003677
Bva04g01955 398 Pfam MYB-CC type transfactor, LHEQLE motif 166 212 IPR025756 -
Bva04g01955 398 Gene3D - 71 129 - -
Bva04g01955 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 29 398 IPR044848 GO:0003700
Bva04g01955 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 129 IPR017930 -
Bva04g01955 398 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 29 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01955 Bva-Chr4 19692493 19694954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01955 104 398 G2-like Transcription Factor Family AT3G04030 45.897 6.56e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bva04g01955 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01955 - - gmx:100786282 414.461