Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01953 ATGGAGGAACCGGTAGTTGTGAACAAAGGAGAAGAAGCTCTGGATTTGCCTCCGGGTTTCAGATTCCACCCAACAGACGAGGAGATCATAACTTACTATCTAACCGAGAAGGTGATGAACAGAAGTTTCAGTGCAACTGCAATAGGAGAAGCTGATTTGAATAAGTGTGAACCATGGGATTTGCCAAAGAAAGCGAAGATGGGGGGGAAGGAGTTTTACTTCTTCTACCAACGAGATAGGAAGTACCCCACAGGGATGAGGACAAATCGGGCAACCGAATCGGGTTACTGGAAAGCCACCGGAAAAGATAAAGAGATTTTCAAAGGGAAAGGAAACCTTGTTGGGATGAAGAAGACCCTTGTCTTCTACAGAGGGAGAGCTCCAAAAGGAGAGAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCTTACCATCTCCCCAGAGCTGCAAAGGATGAATGGGTTGTGAGCAGGGTTTACCACAAGAACACAGGTGTCAAAAAGACTCCAATTCCTGGACTTTTGAGGATGAATTCCCTGAGTGATGATCTGCTGGATTGCTCCACACTCCCACCTCTCATGGACCCTCATCCTCTTAATTATAACACTGACGACGATGATTTCAAAGTGAGCACCAACCCAACTTCATCTGCTAAAGTACCACTTCCATCAGACGGCTATTATCTCCCTAGCTTCCCAATCAACAATCATCAGCTGCTGATCAACAATAACCAAGTCAACTTCGGAAACTCCAATGTTTCACAGCAACAAATTCGAACCCAGAATCCCAGTTTCTCCTCATTCCATCACCAGCAGAATAATAATGTTTCACAGCAACAAGGTTTTGCACTCGCAGGTGGTTCTGAATTCGGGGGCAACACCGTCGTCGACCATGAAGCTTTTGTAAGATCATTTGCAGCTAAGAATGAATTCATGTATGGGTTGGAGAAGCAGTGCAATGTGGAGCAGTTCTCGTGTAACCAGTCGGCGGTGGTGAGCGTCTCGCAGGACACCGGCGTCAGCAATGACAGAAACACTGAGACCTCGTCGGCGGTTTCCAAGCTGCAGCTAGACATGGTAGGGGCAAACAGGTCATTGTACGAAGAATTTGatggtccttcttcttcagTTGCCGCCCTTTCAGACTTGGATGGCTGCCTCTGGGATAACTACTG 1187 0.4591 MEEPVVVNKGEEALDLPPGFRFHPTDEEIITYYLTEKVMNRSFSATAIGEADLNKCEPWDLPKKAKMGGKEFYFFYQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFAYHLPRAAKDEWVVSRVYHKNTGVKKTPIPGLLRMNSLSDDLLDCSTLPPLMDPHPLNYNTDDDDFKVSTNPTSSAKVPLPSDGYYLPSFPINNHQLLINNNQVNFGNSNVSQQQIRTQNPSFSSFHHQQNNNVSQQQGFALAGGSEFGGNTVVDHEAFVRSFAAKNEFMYGLEKQCNVEQFSCNQSAVVSVSQDTGVSNDRNTETSSAVSKLQLDMVGANRSLYEEFDGPSSSVAALSDLDGCLWDNY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01953 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 343 - -
Bva04g01953 395 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Bva04g01953 395 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Bva04g01953 395 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Bva04g01953 395 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Bva04g01953 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01953 Bva-Chr4 19681235 19683342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01953 1 393 NAC Transcription Factor Family AT5G18270 50.244 1.59e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g01953 NAM 9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01953 - - aprc:113861501 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01953 04 19681235 19683342 Bva04g01953 04 19681235 19683342 ECH