Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01948 atgGTGAATGCGATAAAGGCCGCAATTGGAGATGCAGTGTTAACTTTTACCTGGGTATTCTGTGCATCCACGCTGGGATTAGCCACTGCCATGATTACAAAAGAACTTGGGTTTCAACACGTAACCTATAATGGTTTTCCTTTCCCCGAGGTTCTCATCAACACCGTCCTTACCTTTATCGTCGTCTTCGTCTTCACCATCATCGGCAATGCATTGGGAGGTGCCAGCTTCAACCCCGTCGGCACTGCTTCCTTTTATGCAGCTGGTGTCGGCTCAGACACACTTATCTCCATGGCTCTCCGTGTTCCCGCTCAGGCCCTTGGTGCTGTGGGTGGTGCTCTGGCAATTATGGAAGTGATGCCGCCAAAATACAAGCACATGATTGGCGGTCCTTCTTTGAAAGTTGACTTGCATACTGGAGCTATTGCTGAAGGTGTTCTGACATTTTTGATTAGTTTTATTGTTCTCTTTATCATTCTCAGGGGTCCCCGCAGTGAGTTTTTGAAGTCTTGGTTACTTGCGGTGCCAACCGTGGCATTGGTCATGCATGGTACTGCTTACACTGGGCCGTCCATGAATCCTGCTAACGCTTTTGGTTGGGCGTACTTGGACAACTGGCACAACACATGGGACCAACTCTATGTCTATTGGATTTGCCCCTTTGTTGGAGCAATATTCGCTGCTTGGCTGTTCCGGTTTGTGTTCCCTccaccaaaaccaaaaccaaaacagaAGAAAGCCTA 743 0.467 MVNAIKAAIGDAVLTFTWVFCASTLGLATAMITKELGFQHVTYNGFPFPEVLINTVLTFIVVFVFTIIGNALGGASFNPVGTASFYAAGVGSDTLISMALRVPAQALGAVGGALAIMEVMPPKYKHMIGGPSLKVDLHTGAIAEGVLTFLISFIVLFIILRGPRSEFLKSWLLAVPTVALVMHGTAYTGPSMNPANAFGWAYLDNWHNTWDQLYVYWICPFVGAIFAAWLFRFVFPPPKPKPKQKKA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01948 247 Gene3D Glycerol uptake facilitator protein. 1 246 IPR023271 -
Bva04g01948 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 SUPERFAMILY Aquaporin-like 3 243 IPR023271 -
Bva04g01948 247 PANTHER AQUAPORIN SIP1-1 3 244 - -
Bva04g01948 247 Pfam Major intrinsic protein 3 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01948 247 PANTHER AQUAPORIN SIP1-1 3 244 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01948 Bva-Chr4 19650835 19653514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01948 2 247 Major Intrinsic Protein MIP AT5G18290 53.226 5.35e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01948 K09875 - gmx:100792787 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01948 04 19650835 19653514 Bva04g01948 04 19650835 19653514 ECH