Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01947 ATGAACGACCTCATGACCAAATCCTTCACCAGCTATGTGGATCTGAAGAAAGCCGCCATGAAAGACATCGACTTGGAGGCAGGGCTTCCTCCGAAGGACTTAGAATTGAGATCTTCAACGACCCACATGGATACCGACATGGGTCTCTTCTTGGAAGAAGCCGAGAAGGTGAAAACAGAGATGGGTAATCTGCGTGAGATTCTGGAAAGGCTTCAGCAAGCCAACGAAGAGAGCAAGTCCTTGCACAAGCCTGAAGCCCTGAAAGCCTTAAGAAACAGAATCAACGCTGATATAGTCTCTGTGCTAAAGCAGGCCAGGGCGATTCGATCTCAGCTCGAAGAAATGGACCGCGCCAATTCTGCTAacagaagactctccggactCAAAGATGGCACCCCTGCAATTTACAGGACCAGAATTGCAGTCACCAATGGACTGCGAAAGAAGCTGAAGGAGCTGATGATGGACTTCCAGGGATTGAGACAAAGGATGATGACAGAGTACAAGGAAACCGTGGGGAGACGCTATTTCACGGTGACCGGGGAAAACCCGGATGAAGAGGTGATCGAGAAGATCATCTCTAACGGAGACGAGGAGTTTCTGAGCAGGGCTATAAAAGAACACGGGAGGGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCACGATGCCGCTAAGGAGATTGAGAAGAGTCTGCTGGAGCTTCACCAGGTGTTTCTGGACATGGCGGTGATGGTGGAGGCACAGGGTGAGAAGATGGACGACATTGAACATCATGTTCTCCATGCTTCGCACTACGTCAAGGATGGAACTAAGAATCTGCAGACTGCGAAGAAATACCAGAAGAGCAGCAGAAAGTGGATGTGTATTGGTCTCATACTTCTGCTCATTATCATTCTTGTGATTGTCATCCCAATTGCCACCAGTTTCTCTActtcatg 947 0.4773 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLPPKDLELRSSTTHMDTDMGLFLEEAEKVKTEMGNLREILERLQQANEESKSLHKPEALKALRNRINADIVSVLKQARAIRSQLEEMDRANSANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMDFQGLRQRMMTEYKETVGRRYFTVTGENPDEEVIEKIISNGDEEFLSRAIKEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQKSSRKWMCIGLILLLIIILVIVIPIATSFSTS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01947 315 Pfam SNARE domain 254 305 IPR000727 -
Bva04g01947 315 Gene3D - 47 175 - -
Bva04g01947 315 PANTHER SYNTAXIN 4 308 IPR045242 -
Bva04g01947 315 Pfam Syntaxin 50 252 IPR006011 GO:0016020
Bva04g01947 315 SMART tSNARE_6 212 279 IPR000727 -
Bva04g01947 315 SMART SynN_4 42 169 IPR006011 GO:0016020
Bva04g01947 315 SUPERFAMILY t-snare proteins 45 272 IPR010989 GO:0016020|GO:0016192
Bva04g01947 315 Coils Coil 51 81 - -
Bva04g01947 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva04g01947 315 CDD SNARE_syntaxin1-like 216 278 - -
Bva04g01947 315 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 308 - -
Bva04g01947 315 CDD SynN 47 204 IPR006011 GO:0016020
Bva04g01947 315 Gene3D - 213 312 - -
Bva04g01947 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01947 Bva-Chr4 19648079 19649201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01947 1 315 SNARE and Associated Proteins AT1G08560 68.553 1.88e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01947 K08486 - gmx:100816016 516.924