Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01933 ATGGGTGATATAAACCAGGATAAGGATACCCATTACCAGAGTCCCGTGCTTGCAACTGATGGTGATGCACCTACTGAAAATGATGTCAAATTGAGTTCGAGGGACCAAAGAGAAGCTCTGCCAGGTGAGCCCAAGTGTACTATATGTGGGCGCTATGGTGAGTATATTTGTGATGAAACGGATGACGATGTATGTAGCTTGGAATGTAAACAAGTCCTGCTACAAAGAACTGCCAGATTGCGGGTGCCTGTTGATACTGTTTCACCTAAAAAGCTACCTGCAGCTGATGAGTGTTTCTATGTTAGAGATGATGATTATGAGTCAGGAAATCCATCCTCAGCCAGAGGTCAGGCTGAATTGCTCAGAAAGAAGCTTGACATTCACGTGAAGGGTGATGTAGTAGCACCAATTTTGTCTTTCACTTCCTGTAACTTTCCTGACAAGCTGCTGCACAACATGGAAGCTGCAGGATATGACATGCCAACACCTGTCCAGATGCAAGCAATCCCAGCTGCTATGATGGGCAACAGcatgcttgtgttggctgatACTGGATCTGGAAAGTCTGCTTCATTTGTAATTCCAGTAGTGTCTCGTTGTGCAAGTCACCGTCTTAAGCATGCTTCTGACAGGAAGAAGCCATTAGCTATTGTTTTAACACCTACCAGAGAGCTTTGTATACAAGTTGAGGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTTGTTGGCGGTGATGCCATGGCTGGACAGCTCTATCGCATTCAGCAAGGAGTGGAAATGATTGTGGGAACCCCTGGAAGGCTTATTGATCTTTTGACAAAGCATGATATCGACTTAGATGATGTGATGACCTTTGTTGTGGATGAGGTTGATTGCATGTTGCAAAGGGGTTTCCGAGATCAGGTCATGCAGATATATAGGGCTTTGTCGCAGCCCCAGGTGTTAATGTATTCTGCAACAATCTCACCTGAGTTAGAGAAGATGGCAAACTCTCTTGCAAAAGGTACTGTAATTATCTCTGTTGGTGAGCCTAATAGACCAAATAAGGCTGTGAAGCAGCTTGCTATTTGGGTTGAgtcaaagcaaaagaaaaagaagctgtTTGACATTTTGACAAGTAAGCATTTTAAGCCACCTGCTGTCGTATATGTGGACTCTAAACTTGGGGCTGATCTTCTGGCTAATGCAATTACAGTTACCACTGGAATTAAAGCCCTAGCAATTCACGGGGAGAAGTGCATGAAGGAAAGGagagaaataatgaaatcCTTTGTGGTGGGTGATGTCCCAGTTGTTGTGGCAACTGGAGTTTTAGGTAGGGGAGTTGGTCTATTGGGTGTAAGACAGGTAATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGAGCGTCAAGGATGGGAGAAGAAGGTCAAGCCATAATTTTTGTGAATGAGGAGAATAAGAATGTGCTTGCACAGCTGGttgaagttttaaaatctAGTGGAGCAACCGTACCTAGGGAACTTGCTAATTCCCGGTATACCATGGGATTTGTCTCTGGTGGCAAGGGTccgaaaaagagaaagcataGATTATG 1613 0.4172 MGDINQDKDTHYQSPVLATDGDAPTENDVKLSSRDQREALPGEPKCTICGRYGEYICDETDDDVCSLECKQVLLQRTARLRVPVDTVSPKKLPAADECFYVRDDDYESGNPSSARGQAELLRKKLDIHVKGDVVAPILSFTSCNFPDKLLHNMEAAGYDMPTPVQMQAIPAAMMGNSMLVLADTGSGKSASFVIPVVSRCASHRLKHASDRKKPLAIVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLYRIQQGVEMIVGTPGRLIDLLTKHDIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATISPELEKMANSLAKGTVIISVGEPNRPNKAVKQLAIWVESKQKKKKLFDILTSKHFKPPAVVYVDSKLGADLLANAITVTTGIKALAIHGEKCMKERREIMKSFVVGDVPVVVATGVLGRGVGLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIIFVNEENKNVLAQLVEVLKSSGATVPRELANSRYTMGFVSGGKGPKKRKHRL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01933 537 CDD SF2_C_DEAD 357 488 - -
Bva04g01933 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 518 IPR001650 -
Bva04g01933 537 MobiDBLite consensus disorder prediction 1 37 - -
Bva04g01933 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 519 - -
Bva04g01933 537 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 26 519 - -
Bva04g01933 537 Pfam Helicase conserved C-terminal domain 369 479 IPR001650 -
Bva04g01933 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 493 IPR027417 -
Bva04g01933 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Bva04g01933 537 Pfam HIT zinc finger 44 70 IPR007529 -
Bva04g01933 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Bva04g01933 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 347 IPR027417 -
Bva04g01933 537 SMART helicmild6 397 479 IPR001650 -
Bva04g01933 537 Pfam DEAD/DEAH box helicase 162 333 IPR011545 GO:0003676|GO:0005524
Bva04g01933 537 Gene3D - 348 520 IPR027417 -
Bva04g01933 537 Gene3D - 108 347 IPR027417 -
Bva04g01933 537 Gene3D - 25 81 - -
Bva04g01933 537 SMART ultradead3 157 360 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01933 Bva-Chr4 19563257 19566438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01933 132 516 Eukaryotic Initiation Factors Gene Family AT3G19760 28.462 3.79e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01933 K19466 - gmx:100781473 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01933 04 19563257 19566438 Bva04g01933 04 19563257 19566438 ECH