Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01926 ATGAGTTTTCAAGACATCCAAGGTGGGCCCAAGGGACAACCCGGTGGGCGAATCCAGTCACCGTCGCAGGCGGTGGCTGCAGGCATTTTCCAGATCAACACCTCCGTCGGTACTTTCCGACGACTCGTGGATGCCATCGGAACCGTTAAAGACACTCAACAGCACCGTCGAAATCTGCACAACACGAGGCAGCGGATATTGCAGCTGGTTAAGGATACTTCCGCTAAGCTCAAGTCCTTGAGCGAATCTGATCACGATGCTGGTATCAGTCCTAATAAGAAAATCCAAGATGCCAAACTAGCCAGAGACTTCCAAACCATACTGGAAGAATTCCAGAAAGTTCAGCAGCTTGCTAATGAGCGTGAGTCAACTTATGTCCCTGCTGCCCCTCCTCCTTCTCTACCAACAAGCTCTGCCTTTGGTGAAGAATCCATTGACAAAGATCAGGAAAGGCAACCTTTTCTCGGGGAGCAAAAGAGgcAGGAGATACTGCTATGGGATAATGAGATTTCCTTCAATGAGGCCATGATTGAAGAAAGAGAGCAGGGCATTAGAGAGGTGGAAGAGCAAATTGGAGAAGTAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCACGAGCAAGGAGTAGTCATCGATGACATTCAGTCAAACATCGATTCTTCTGCCGGTGCAACATCCCAAGCTAAAGTTCAGCTATCCAAGGCTTCAAAGAGTGTGAAATTCAGATGCTCATGGTGTTGGTGGGTACTTGCAGTTATTGTGGTGGCACTGGTCATCTTTCTTCTCGTTGTCATTCTTTA 803 0.4732 MSFQDIQGGPKGQPGGRIQSPSQAVAAGIFQINTSVGTFRRLVDAIGTVKDTQQHRRNLHNTRQRILQLVKDTSAKLKSLSESDHDAGISPNKKIQDAKLARDFQTILEEFQKVQQLANERESTYVPAAPPPSLPTSSAFGEESIDKDQERQPFLGEQKRQEILLWDNEISFNEAMIEEREQGIREVEEQIGEVNEIFKDLAVLVHEQGVVIDDIQSNIDSSAGATSQAKVQLSKASKSVKFRCSWCWWVLAVIVVALVIFLLVVIL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01926 267 PANTHER SYNTAXIN 15 266 IPR045242 -
Bva04g01926 267 Gene3D - 168 267 - -
Bva04g01926 267 SMART SynN_4 10 123 IPR006011 GO:0016020
Bva04g01926 267 SMART tSNARE_6 169 236 IPR000727 -
Bva04g01926 267 PANTHER SYNTAXIN-22-LIKE 15 266 - -
Bva04g01926 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Bva04g01926 267 Gene3D - 14 130 - -
Bva04g01926 267 MobiDBLite consensus disorder prediction 124 146 - -
Bva04g01926 267 SUPERFAMILY t-snare proteins 19 229 IPR010989 GO:0016020|GO:0016192
Bva04g01926 267 CDD SNARE_Qa 177 235 - -
Bva04g01926 267 Pfam Syntaxin-like protein 26 126 IPR006011 GO:0016020
Bva04g01926 267 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g01926 267 Pfam SNARE domain 211 262 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01926 Bva-Chr4 19532582 19534668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01926 1 254 SNARE and Associated Proteins AT5G46860 59.073 2.42e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01926 - K08488 aip:107604899 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01926 04 19532582 19534668 Bva04g01926 04 19532582 19534668 ECH