Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01921 ATGGTTCTTCAGAATGATATTGATTTGCTGAACCCACCAGCTGAGctcgaaaagaagaagcacaAGCTGAAGCGTCTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTCAAGTGCCAGGGATGCTTCAACATAACAACTGTATTCAGCCACTCTCAGACAGTTGTGGTATGCGGAAATTGCCAGACCGTCTTGTGCCAGCCAACAGGTGGAAGggcaaggttgaccgaaggtTGCTCCTTTAGGAAGAAGGGAGACTA 260 0.4 MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01921 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bva04g01921 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bva04g01921 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Bva04g01921 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bva04g01921 86 Gene3D - 5 85 IPR023407 -
Bva04g01921 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bva04g01921 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01921 Bva-Chr4 19506171 19506966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01921 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 2.54e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01921 K02978 - tcc:18601152 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01921 04 19506171 19506966 Bva03g00209 03 1287701 1288506 BWGD
Bva04g01921 04 19506171 19506966 Bva04g01921 04 19506171 19506966 ECH