Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01911 atGTTTGCTGTTCACCCATCACCATCTGAGGACCAACAGGATCAAAGCTCTTCACTCTCATATCCCTTTTCATATCTTATCAGCCCCAGTAGTGCTGATACTAGCACCTTCCAAATCACAGTCCCACATGGACAAATAAGCAGCTCTTCTGGCTTGATCCAGAAGCAGGCCCCATCGCACCCTGTTCATCAAGGTAATGTTAGAAAAAGACATTATAGGGGCGTGAGACAGAGACCGTGGGGAAAATGGGCGGCCGAAATCCGAGACCCAAAAAAAGCTGCAAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGATGCTGCTGCAGCTTACGATGCTGCAGCACTCGAGTTCAAAGGAGCCAAAGCCAAGCTCAATTTTCCCGAACGCGTTGCTCAAGGATCACACTCTACTTCAAACTATGCTCCATCAACTAATAACACTAATGTGCAATTTCCCAGCCCGGCAACTCCTTTTCCGCCACTTCATGAGGCGCCGCAGCCACCGGTTTCTCAAGCTTTGCCACCTCCTTTGACGTCAGAAGTGGGATTCCCAAACCTTATGCAGTACGCACAGCTGCTTCGCAGTAATGATGATTATGATTTGGAACGTGCTGCTTCTGGTCTTTATTATTCCAATGAATCAGCTCTATTTCCATTCTTCTCAACTTCGTCAAGTTCAATGGCTGAGTATGACCAGCATCAGGTTGAAGATAGTCAGAAGGCACACAAGGGACAGTACAGTAAGACCGATCGAAATGATTA 764 0.4764 MFAVHPSPSEDQQDQSSSLSYPFSYLISPSSADTSTFQITVPHGQISSSSGLIQKQAPSHPVHQGNVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAAAYDAAALEFKGAKAKLNFPERVAQGSHSTSNYAPSTNNTNVQFPSPATPFPPLHEAPQPPVSQALPPPLTSEVGFPNLMQYAQLLRSNDDYDLERAASGLYYSNESALFPFFSTSSSSMAEYDQHQVEDSQKAHKGQYSKTDRND 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01911 254 MobiDBLite consensus disorder prediction 48 74 - -
Bva04g01911 254 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 PANTHER DNA-BINDING DOMAIN 57 239 IPR044808 GO:0003700|GO:0009873
Bva04g01911 254 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Bva04g01911 254 MobiDBLite consensus disorder prediction 154 172 - -
Bva04g01911 254 MobiDBLite consensus disorder prediction 134 172 - -
Bva04g01911 254 Pfam AP2 domain 71 120 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 MobiDBLite consensus disorder prediction 234 254 - -
Bva04g01911 254 MobiDBLite consensus disorder prediction 134 153 - -
Bva04g01911 254 MobiDBLite consensus disorder prediction 228 254 - -
Bva04g01911 254 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Bva04g01911 254 PANTHER - 57 239 - -
Bva04g01911 254 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01911 Bva-Chr4 19438822 19440844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01911 54 138 AP2-EREBP Transcription Factor Family AT5G61890 78.824 3.83e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g01911 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01911 - - ccaj:109818971 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01911 04 19438822 19440844 Bva03g02302 03 19919142 19921506 BWGD
Bva03g00221 03 1348640 1350521 Bva04g01911 04 19438822 19440844 BWGD
Bva04g01911 04 19438822 19440844 Bva06g01576 06 11276684 11279055 ECH
Bva04g01911 04 19438822 19440844 Bva05g00184 05 893342 894587 ECH
Bva04g01911 04 19438822 19440844 Bva04g01911 04 19438822 19440844 ECH
Bva03g00221 03 1348640 1350521 Bva04g01911 04 19438822 19440844 ECH
Bva06g01678 06 11780672 11782758 Bva04g01911 04 19438822 19440844 ECH
Bva05g00103 05 522496 523054 Bva04g01911 04 19438822 19440844 ECH