Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01904 ATGGAGAGGGAGATGCTACAAAGAGCTCATGGCCTTCCTTGGATGGAAGGAGAAGTTGAAGACGCAGCATCTTGGACCAGAAATAACAACGAGGGCGAGCCCAAAGACGAGGACATTGCCATGGGTGGTCCTCTAACTTCCTTCAAATCAATGCTTGAAGGTGACTGGTACTTGAATTCTGCTGTTAACCCACCTCACCAGGACCTTCCTAATCTCCCAAATCACCATGAAACCAGAGATATTGGCTTTTGCTCAAACCCAACTGATAATTTTCTCATACAGCCTATTGATTCGTCGTCTTCCTGTTCACCGTCTTTCAATCTCGACCCATCACAGTCACAGCCTTTTTTGCCTCCCAAATCGTGCTTCTCTTCTCTGTTCAATGTCGGTAACAACAACCCTTTTGATAATGGCTTCGATTTGGGCTCTGAAACTGGGTTTCTCCCTCCATTCCATGGGAATCAGTCTTCAAATTCCCCTGGTTTGATGGGGTTCTCGGGATTAAACACTCAATCTCAGATGGGTACCATCGAACTGAGTTCAAGTTCAGAGTTTCCATCAACTCGGCTGCTTCCGGTAGCTGACAATGCCACTGCACTTGGTGGCGGATTTACTCCAACGGGTTTAGAGGGTTTCGATAATTCGGGAAGTGCTCTTTTTCTTAACAGCTCTAAGGTTTTAAGACCTCTGGACGTATTTCCTCAAGTGGGGTCACAACCCACTCTTTTTCAGAAGCGAAAGGCGCTTCGTCAAAACTCTAGTGGAGCTGATAAATTGGGGACTTTGGAGATTTCAGCATCGAGATTTGACGACTCTTCATTGAGGTTGGAGAACATggagaggaaaaggaagaaaacggATGAGAGCGAAATTGAGGAATTAAGTGTCGATGCTTCAGGGTTGAATTATGACTCCGATGAGCTTAATGACAGTGGTAGGATTGAGGAGAACGGAAATAATGGAGGAAGCAATTCTAATGTCAACAGTACTGTTACTGGTGGAGACCagaaggggaagaaaaagGGGCTACCGGCGAAAAATCTCATGGCTGAGAGACGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCGGTTGTGCCCAAGATTAGCAAGATGGACAGGGCTTCCATACTTGGGGATGCAATTGACTACTTGAAGGAGCTTCTGCAGCGGATTAATGATCTGCATAATGAGCTGGAGTCAGCTCCTCCAGGTTCGGTGCTGCCATCTTCAACAAGCTTTCACCCTTCGACACCCACCGCACCAACTCTTCCTTGCCGTATCAAGGAAGAACTATGCCCCAGCTCCTTGCCAAGCCCCAAAAACCAACCTGCAAGGGTGGAGGTTAGGCTTAGGGAAGGGAGGGCTGTCAACATTCATATGTTTTGCAGCCGCAGACCAGGTCTTCTGTTGTCCATTATGAGGTCTCTGGATAACCTTGGATTGGATGTTCAGCAAGCTGTTATTAGCTGTTTCAATGGCTTCGCTTTAGATGTTTTCAGAGCTGAGCAGCAATGCAGAGAAGGCCAGGATGTGCTGCCTGAGCAAATCAAAGCTGTGCTGTTGGATTCAGCGGGTTTCCAAGTATG 1598 0.4599 MEREMLQRAHGLPWMEGEVEDAASWTRNNNEGEPKDEDIAMGGPLTSFKSMLEGDWYLNSAVNPPHQDLPNLPNHHETRDIGFCSNPTDNFLIQPIDSSSSCSPSFNLDPSQSQPFLPPKSCFSSLFNVGNNNPFDNGFDLGSETGFLPPFHGNQSSNSPGLMGFSGLNTQSQMGTIELSSSSEFPSTRLLPVADNATALGGGFTPTGLEGFDNSGSALFLNSSKVLRPLDVFPQVGSQPTLFQKRKALRQNSSGADKLGTLEISASRFDDSSLRLENMERKRKKTDESEIEELSVDASGLNYDSDELNDSGRIEENGNNGGSNSNVNSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESAPPGSVLPSSTSFHPSTPTAPTLPCRIKEELCPSSLPSPKNQPARVEVRLREGRAVNIHMFCSRRPGLLLSIMRSLDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGFQV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01904 532 Coils Coil 385 405 - -
Bva04g01904 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Bva04g01904 532 SMART finulus 348 397 IPR011598 GO:0046983
Bva04g01904 532 CDD bHLH_AtAMS_like 345 416 - -
Bva04g01904 532 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 531 - -
Bva04g01904 532 Pfam Helix-loop-helix DNA-binding domain 349 391 IPR011598 GO:0046983
Bva04g01904 532 CDD ACT_UUR-ACR-like 462 523 - -
Bva04g01904 532 Gene3D - 336 405 IPR036638 GO:0046983
Bva04g01904 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 415 IPR036638 GO:0046983
Bva04g01904 532 MobiDBLite consensus disorder prediction 301 346 - -
Bva04g01904 532 MobiDBLite consensus disorder prediction 314 335 - -
Bva04g01904 532 PANTHER BHLH TRANSCRIPTIONAL FACTOR 92 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01904 Bva-Chr4 19403594 19408206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01904 24 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.478 1.57e-154 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g01904 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01904 - - vvi:100265294 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01904 04 19403594 19408206 Bva03g00232 03 1416046 1419726 BWGD
Bva04g01904 04 19403594 19408206 Bva04g01904 04 19403594 19408206 ECH
Bva03g00232 03 1416046 1419726 Bva04g01904 04 19403594 19408206 ECH