Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01899 ATGGCGACCAGGTACTGGGTGGTCTCTCTTCCCGTCCAAAATTCAGCATCTGCTCTTTGGAAACAATTGCAGGAGCAAGTTTCCAAGCATTCCTTCGATACTCCGCTTTACAGATTCAATACACCTAATCTCCGTGTTGGAACCCTAGATTCTCTCCTTTCTCTCAGCGATGATCTCGTAAAGTCAAACAGTTTCATGGAAGGAGTGTCACACAAGATCAGGAGACAGATTGAGGAATTGGAGAGAATTTCTGGTGTAGTGAGCAGTGGCCTGACAGTCGATGGTGTGCCTGTTGATTCATACTTGACAAGGTTTGTTTGGGATGAAGCGAAGTACCCGACTATGTCACCTCTGAGGGAGATCGTGGATAGCATTCATGGTCAAGTAGCAAAAATTGAGGATGATCTCAAGGTACGTGTTGCTGAGTATAACAACATTCGCAGTCAGCTTAATGCTATCAATAGAAAGCAAAGTGGAAGCTTAGGCGTCCGTGATCTTTCAAATCTGGTAAAACCTGAAGATATTATAACTTCAGAACATTTAACTACCCTCCTAGCAATCGTTCCCAAATATTCACAGAAGGATTGGCTCTCTAGCTATGAAACATTGACAAACTACGTGGTACCCAGGTCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTGTATACTGTTACACTCTTTAGTCGTGTTGCAGACAATTTTCGGACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATTTTGAGTACAGTCAAGAAACACATGAAGGTCGGAAGCAGGAGTTAGAGAATTTGATGCAGGATCAGGAAAGATTGAGAGGTTCCCTTTTGCAGTGGTGTTATACTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCCGTACGTGTCTTTGCTGAGAGTATTCTGAGATATGGCCTGCCACCATCTTTCTTGGCATGTGTTCTAGCTCCATCTACGAAGGGTGAGAAGAAAGTACGATCTATTcttgaaggattgtgtgaTGTCGCAAACAGTGCATACTGGAAGACCGATGATGACGTAGGAGGTGGGATGGCTGGTCTGGCAGGTGATGCTGATGCCCACCCGTATGTCTCCTTCActatcaatcttgcttg 1130 0.4301 MATRYWVVSLPVQNSASALWKQLQEQVSKHSFDTPLYRFNTPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERISGVVSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLREIVDSIHGQVAKIEDDLKVRVAEYNNIRSQLNAINRKQSGSLGVRDLSNLVKPEDIITSEHLTTLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHEGRKQELENLMQDQERLRGSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSTKGEKKVRSILEGLCDVANSAYWKTDDDVGGGMAGLAGDADAHPYVSFTINLA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01899 376 Coils Coil 254 274 - -
Bva04g01899 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bva04g01899 376 Gene3D - 41 312 - -
Bva04g01899 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
Bva04g01899 376 Gene3D - 163 251 - -
Bva04g01899 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bva04g01899 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bva04g01899 376 Gene3D Vacuolar atp synthase subunit c; domain 1 6 334 - -
Bva04g01899 376 SUPERFAMILY Vacuolar ATP synthase subunit C 1 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01899 Bva-Chr4 19364538 19369789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01899 1 376 Primary Pumps ATPases(2) AT1G12840 82.181 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01899 K02148 - gmx:100803728 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01899 04 19364538 19369789 Bva04g01899 04 19364538 19369789 ECH
Bva03g00240 03 1468800 1473607 Bva04g01899 04 19364538 19369789 ECH