Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01898 ATGATGATGGATCATCAGAGACAGCGAGAGAAGCTGCTTCAGAATACCGAGGCCTGTGCTTTGGTGGCAGGTGTTGGGGCTGAGCTAGGCTTTGTCACTGTATCAGGCGACAGCGAGATGATAAATCACGGGTCGGGTCATCGGATCCCTGAGCTTGATCTTGTTGCAGCCGCCGTTACCACTTTGGGCACTGTTCATAGGAAGAAAAGGATGGCCAGGCAGAGGAGGTCCTCCATCTCCACCATGATGGTCAATCTTCTCTCCAAGGCATCACCTTGCAGTTCCACCACCTCGCACGTGCCACTCCTCCAAGCCGATCCCTTGCAATCCCATAAACCATCCAGTACCTCTACCATCTCTCTCCCACCCACACGTGACATTGATCATAGAAGGTTGAGATTCCTGTTCCAGAAGGAGCTCAAGAACAGTGATGTAAGCTCCCTTAGAAGAATGATACTCCCAAAGAAAGCAGCAGAAGCCTTCCTTCCAGCCCTTGAGTCAAAAGAAGGAATTCTTATCAGCATGGATGATCTGGATGGTCTTCATGTATGGAGCTTCAAGTACAGGTTTTGGCCCAATAACAACAGCAGGATGTATGTACTAGAAAATACCGGGGAATTTGTTAACACTCATGGCCTACGCTTGGGAGATTCCATCATGATTTACCGAGACGATCAAAACCATAATTATGTCATTCAGGCCAAAAAGGCTTCTGATGAAGATGATTTTATGGCGATAACAAGCGATACAATCAACGACATCTTTCTCCATGATTATGAGCTGGTTAACAAACCCAATGTGATATATCCAACGATTGATGACACTGATATGTCGTTTATCTATGAGACTACCTTCTCAAACGACTCTCCGCTTGACTTTCTGGGAGGATCAATGACCAGTTTTTCAAGGATTGGATCCTCAGTGGAAACCTTTGGTCCCGTTGAGAATTTATTACTAGATGATTTCTATTA 971 0.4583 MMMDHQRQREKLLQNTEACALVAGVGAELGFVTVSGDSEMINHGSGHRIPELDLVAAAVTTLGTVHRKKRMARQRRSSISTMMVNLLSKASPCSSTTSHVPLLQADPLQSHKPSSTSTISLPPTRDIDHRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGILISMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGEFVNTHGLRLGDSIMIYRDDQNHNYVIQAKKASDEDDFMAITSDTINDIFLHDYELVNKPNVIYPTIDDTDMSFIYETTFSNDSPLDFLGGSMTSFSRIGSSVETFGPVENLLLDDFY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01898 323 SUPERFAMILY DNA-binding pseudobarrel domain 134 233 IPR015300 -
Bva04g01898 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 65 323 - -
Bva04g01898 323 SMART B3_2 136 238 IPR003340 GO:0003677
Bva04g01898 323 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Bva04g01898 323 CDD B3_DNA 134 236 IPR003340 GO:0003677
Bva04g01898 323 Pfam B3 DNA binding domain 136 234 IPR003340 GO:0003677
Bva04g01898 323 Gene3D - 132 250 IPR015300 -
Bva04g01898 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 65 323 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01898 Bva-Chr4 19360533 19363826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01898 16 323 B3 DNA Binding Superfamily AT3G26790 48.538 8.63e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva04g01898 B3 1.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01898 - - gmx:100783961 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01898 04 19360533 19363826 Bva04g01898 04 19360533 19363826 ECH