Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01890 ATGTTGATACCCTGCGATTTTTGCGACTCCAAAACGGCTGTGCTCTACTGCAAAGCTGACTCGGCAAAGCTTTGCTTGTTATGTGACCAGCATGTCCACAAGGCCAATGCTCTCTCGCTCAAGCACGTCCGTTTTCAGATTTGCGACAACTGTAAGAACGACACCGCCACAATTCAGTGCCCTACTGATAGCCTTATACTATGCCAAGTATGCGATTGGGACGTTCACAACAACTCTTCTACCTCCTCACTCCATGAGCGTACCCAAGTTGAAGGGTTTTCTGGGTGTCCCTCAATTATTGAGCTCGCCACAGTTTTTGGGTTTGATTGGAAACCGAAAGATTTGAACGCTATGGATTTGGGGTCTCGTCAAAATGAGCTCAAATTGAAGTACTTTCAGGGATATATGGTCCCGGATTTTCATTCCTCTGTTTCTTCTGCATTGCCTAAAGAccagaatttgaaatgtggAAATTATAGGGACGATGCTTATGAGCAATTGTTGGAGATGGCAAGGAGAAATTTAGCTCAAATAGATAAAGAAAGAGCTGAGTTGGATCCAGGGACACCTCCGGGTAGATTAGCCCATCAGGTAGATGTGGAGAGCCTCGAGTTGAACAACGGTGATGATCATGAGTTGCTTCAGCAGCAAACGCTATTCACGTCTTTACTTATGTTGCCAACTGATGGGGACTCGAGAAACACCGATTACGCTAGTGAAGGAGATCTTCTGTGGGATTCTTCCAATCCCTCATATCAGATGGCACAGGTTTGGGATTTCCAATCAGGAAAACCAAGAGATTGCGGAGAACCCAAGTTATCGATGTTTGATAGTCTCGAAGAATCTTCCTTAATGATACCAAGAACGTTTCAAGACATAGACAATATGaattgcatgacatttggtgATGATCTTTTGTCAAGAAATAATCAATCAGATCAGTCATCATCCAGCCATGTAATgatgaaagaagaaagctaCAAGAAACCTAGAGATGGGTTATCGTCGGGGTCCAATTTGATAGAATCCATGATTTACAATGGCACAGTCATGGAGCACTTTGTTGGCGGGAGTGAGGATGCAAACATGGTGAGACCCAAGGTTAGCGCAGACGAGCTGGCAAAGAACAGAGGCGATGCAATGTTACGCTacatggagaagaagaaaactcgAAGGTATGATAAGCACATTCGTTATGAATCAAGGAAAGCCAGGGCTGACTTGAGGAAGCGGGTGAGAGGGCGATTTGTGAAGGCAAGTGATGCAACGGATGCTCAAgtatg 1283 0.4217 MLIPCDFCDSKTAVLYCKADSAKLCLLCDQHVHKANALSLKHVRFQICDNCKNDTATIQCPTDSLILCQVCDWDVHNNSSTSSLHERTQVEGFSGCPSIIELATVFGFDWKPKDLNAMDLGSRQNELKLKYFQGYMVPDFHSSVSSALPKDQNLKCGNYRDDAYEQLLEMARRNLAQIDKERAELDPGTPPGRLAHQVDVESLELNNGDDHELLQQQTLFTSLLMLPTDGDSRNTDYASEGDLLWDSSNPSYQMAQVWDFQSGKPRDCGEPKLSMFDSLEESSLMIPRTFQDIDNMNCMTFGDDLLSRNNQSDQSSSSHVMMKEESYKKPRDGLSSGSNLIESMIYNGTVMEHFVGGSEDANMVRPKVSADELAKNRGDAMLRYMEKKKTRRYDKHIRYESRKARADLRKRVRGRFVKASDATDAQV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01890 427 CDD Bbox1_BBX-like 4 47 - -
Bva04g01890 427 Pfam CCT motif 377 419 IPR010402 GO:0005515
Bva04g01890 427 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bva04g01890 427 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bva04g01890 427 MobiDBLite consensus disorder prediction 307 335 - -
Bva04g01890 427 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bva04g01890 427 ProSiteProfiles CCT domain profile. 377 419 IPR010402 GO:0005515
Bva04g01890 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 426 - -
Bva04g01890 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 3 426 - -
Bva04g01890 427 CDD Bbox1_BBX-like 47 90 - -
Bva04g01890 427 MobiDBLite consensus disorder prediction 307 321 - -
Bva04g01890 427 Coils Coil 161 181 - -
Bva04g01890 427 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01890 Bva-Chr4 19312655 19316443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01890 2 421 C2C2-CO-like Transcription Factor Family AT2G33500 36.771 2.82e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva04g01890 CCT 9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01890 - - ahf:112697135 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01890 04 19312655 19316443 Bva04g01890 04 19312655 19316443 ECH