Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01883 ATGGAGAAACTCCCTGGCTCTGTCGTCAATGGGGGCTTGAAATTGCCTATTGGGTACAGATTCTGTCCCACCGATGAAGAGCTTGTCATTCACTACCTGAAGAGAAAGGCCCTTGCTCAGCCATTACCAGCTTCTGTTATTCCTGAATTTGATGTTTTGCAAACTGACCCTCGAGGGCTTCCAGGTGTAGGTGATTTGAAAGAAAGGAGGTACTTTTTTAGCAATAGAAGGGATCATGCATATGGGAACATTAGCAGGAGAGCTGCTGGTTCTGGGTATTGGAAATATACAGGcaaagacaagaaaattgtAGTTTCTGCCAGCAATAAGCTGGTTGGAATAAGGAAAACACTGGTTTTTTGCGAAGGGAAACGTTCTCATGTGACCAATTTCCGGTGGATCATGCATGAACTGCGCCTTGTAGTTTCTGCATCAGCTTCTTATCCATGTCAGATGTCAGTGTCAGATTGGGCTGTGTATCGCATAtttcagaagaaaagaaagcttaAGAGAAAAGCTTCTAATGGGAAGCCATGTAACAGCAGAAAAGTTCAGACATTAGAAGATAAGATTAAACCAAGTTTCATAGATTTCATGGTGGAATGTGGAGATGATTCAAGTCCTCCCCCACCTTGTTCCCCATGTTTCAGTGAAGGCAGTGATACAgcttttaacaaatttta 683 0.4041 MEKLPGSVVNGGLKLPIGYRFCPTDEELVIHYLKRKALAQPLPASVIPEFDVLQTDPRGLPGVGDLKERRYFFSNRRDHAYGNISRRAAGSGYWKYTGKDKKIVVSASNKLVGIRKTLVFCEGKRSHVTNFRWIMHELRLVVSASASYPCQMSVSDWAVYRIFQKKRKLKRKASNGKPCNSRKVQTLEDKIKPSFIDFMVECGDDSSPPPPCSPCFSEGSDTAFNKF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01883 227 PANTHER NO APICAL MERISTEM PROTEIN, EXPRESSED 12 180 - -
Bva04g01883 227 ProSiteProfiles NAC domain profile. 15 165 IPR003441 GO:0003677|GO:0006355
Bva04g01883 227 Gene3D NAC domain 24 171 IPR036093 GO:0003677|GO:0006355
Bva04g01883 227 PANTHER NAC TRANSCRIPTION FACTOR 56 12 180 - -
Bva04g01883 227 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Bva04g01883 227 MobiDBLite consensus disorder prediction 206 227 - -
Bva04g01883 227 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01883 Bva-Chr4 19276225 19277599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01883 8 199 NAC Transcription Factor Family AT5G13180 46.890 9.73e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g01883 NAM 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01883 - - lang:109340127 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01883 04 19276225 19277599 Bva06g01544 06 11078150 11079564 ECH
Bva04g01883 04 19276225 19277599 Bva04g01883 04 19276225 19277599 ECH
Bva03g00256 03 1558723 1560110 Bva04g01883 04 19276225 19277599 ECH
Bva06g01697 06 11890057 11891585 Bva04g01883 04 19276225 19277599 ECH
Bva05g00082 05 414594 416081 Bva04g01883 04 19276225 19277599 ECH