Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01880 ATGGGTCGCTGTCCATGTTTTGGGAAGCGGACGAGGaaggacaagaaagaaaaagaaaaggttgatGAGGACAACGACGATGGAATCCAGAACGATAATGCGCAGGATGTTGTTGTCCCCGGTCCTCAAATAACTTCAGGGTTCGATACAGGAGTCGTGCCAGAACAACCTGCCATAACAGAGAATATCACTCCTAATGAGGCTGCAATATTTAAGTTTCGAGAGCTAGCAACAGCAACCAAAAATTTCAGGAATGAGAGCTTTATTGGGCAAGGTGGGTTTGGAGCTGTTTACAAGGGCAAGTTAGAGAGCACTGGTCAGATTGTGGCTGTTAAAAGACTTGACACAGCAGGGATCCAAGGGGAGAAAGAGTTTCTAGTGGAGGTTCTTATGCTTTCTCTTCTGCGTCATCCCAACCTTGTCAACATGATTGGTTACTGTGCTGAAGGGGATCAACGTCTTCTTGTATATGAGTATTTGCCTTTGGGGTCCTTAGAATCTCACCTCCATGATCTTCCACCTGGTGCAGAACCGCTGCCATGGAAAGTAAGAATGAACATAGCCTATGGAGCAGCTCTTGGATTGAATTATCTGCACCATGAAGCAAAACCTGCTGTCATATACAGGGACTTAAAATCAGCTAACATATTGCTGGACGAAGGTTTCCATCCCAAGCTTTCAGATTTTGGCCTTGCAAAGTTTGGTCCAAGTGGAGATCGCTCCCATGTCTCCACCAGGGTAATGGGAACCCATGGCTACTGTGCCCCTGAGTATGCCACCAGTGgaaaattaacaatgaaatCTGACATCTTCAGTTTTGGGGTACTCTTGCTGGAGCTTATTACTGGACGTAAAGCACTAGATGATCGCCTAGGCCGTGACAGATACCTTGTTGAGTGGGCACGTCCACTGTTCAGAGACAGAAGGGCTTTTTCCAAATTGGCAGATCCAATGTTGGAGAGAAACTACACAAGACATGGCTTAAAGATGGCTCTTGAATTGGCATTCATGTGTCTCCGAGAAGAAGCCAATCTCAGGCCCACAGCAGGTGATATAGTGCTTGCTCTGGGATACTTAACATCCAGGAGTAACACCCCAAAAGCTGTCAGCATGGAAAACGCACCAAGCATTATTGCAGATCCTGACTCTCCAAATGAAACTGCGAGAATGCTGGCCAGGAGCCTGCAAAGGGAGAAAGCTGTTGCAGAGGCCAGGCAATGGGGAGAGGCttggagagaaaagagaagacaaagTGCTCAGAATAGCCCTGAGGGACTTAACATAGACAGGTA 1292 0.4505 MGRCPCFGKRTRKDKKEKEKVDEDNDDGIQNDNAQDVVVPGPQITSGFDTGVVPEQPAITENITPNEAAIFKFRELATATKNFRNESFIGQGGFGAVYKGKLESTGQIVAVKRLDTAGIQGEKEFLVEVLMLSLLRHPNLVNMIGYCAEGDQRLLVYEYLPLGSLESHLHDLPPGAEPLPWKVRMNIAYGAALGLNYLHHEAKPAVIYRDLKSANILLDEGFHPKLSDFGLAKFGPSGDRSHVSTRVMGTHGYCAPEYATSGKLTMKSDIFSFGVLLLELITGRKALDDRLGRDRYLVEWARPLFRDRRAFSKLADPMLERNYTRHGLKMALELAFMCLREEANLRPTAGDIVLALGYLTSRSNTPKAVSMENAPSIIADPDSPNETARMLARSLQREKAVAEARQWGEAWREKRRQSAQNSPEGLNIDR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01880 430 CDD STKc_IRAK 89 353 - -
Bva04g01880 430 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Bva04g01880 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Bva04g01880 430 ProSiteProfiles Protein kinase domain profile. 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01880 430 PANTHER OS07G0668900 PROTEIN 4 371 - -
Bva04g01880 430 MobiDBLite consensus disorder prediction 7 27 - -
Bva04g01880 430 SMART serkin_6 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01880 430 Gene3D Transferase(Phosphotransferase) domain 1 160 382 - -
Bva04g01880 430 Coils Coil 385 405 - -
Bva04g01880 430 MobiDBLite consensus disorder prediction 1 36 - -
Bva04g01880 430 Gene3D Phosphorylase Kinase; domain 1 51 159 - -
Bva04g01880 430 MobiDBLite consensus disorder prediction 406 430 - -
Bva04g01880 430 PANTHER OS07G0668900 PROTEIN 4 371 - -
Bva04g01880 430 SUPERFAMILY Protein kinase-like (PK-like) 62 356 IPR011009 -
Bva04g01880 430 Pfam Protein kinase domain 84 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01880 Bva-Chr4 19256952 19260152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01880 55 416 Glycoside Hydrolase AT3G07070 57.300 2.04e-140 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bva04g01880 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01880 K13430 - gmx:100809298 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01880 04 19256952 19260152 Bva04g01880 04 19256952 19260152 ECH