Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01873 ATGAATTCACTTTGTGGAAGCTCAGTGTCCCTCAAGAGTGAGAAATCGACTAGTGattcaaataagaaaagtGGGACTGAATCCTCTGATTTAGAGCAGAGTAGTTTGACCCCACCAAGCTTAAACCTTCCTTCTCTCAAATCTGAGTTGGACGGAGATGTTGAAGTTCAATCACCAGACAGTTCTTCTTTGTGGGAATCGTTTCTCTATGATCAACTAGAACCCGATTTTATGATCACTTCGCCGGTGAGGAACGTGGCTTCATCACAAGCTTCCACGTATAACTATGCTCAAGCAATGCAGGTGCAGAGTCTTTCTGGGTGTTCACCACCTCGCTTTGGAACTTTCAACAGCAGCCACAAAGAGAAGGGATTGAGTCCTCTTCATAGGGTATCTAACTCTCCGAATAATCGCTACATGCAGCAACATGTGGAGAATCTTGCACTGCCAGCCATTGAAGAGTTCTTGGTTGATTATCATAGTGGAGATCATGGGCTTGGAGTTGGAGGCTACTCTTCAACCCAGGTGTCTGATATAGCGAATTCATCAGAATGGCAAAATTCAATTCCATCAATGTTGGATAGCTTGACAATTCCTAATTCGATGACAAGGTTTTGTGGATCAGTGAATGAAGAATCTTCTTCTTCGGTGCCCGCAGGTGCTAATTCTCAACTTTCCCAAGAGAGTCATGATATGTATCAGATGGGGTCTGTTGCCACTGCATCATCTCTGTCACAAGTTTTGCAACAAGAACGCCAGCACGAGAAGCACCACAAGCAGCAATCACATGCACACCCACATAGCTTGATGGTGCCTCTACCTATTGCCAACGAACagCAGGAGCAAGACAGCGGGCTTCAACTAGTGCATCTGCTTCTGGCATGTGCTGAAGCAGTGGCCAAAGAAGAATACATGTTAGCAAGAAGGTACCTGCACCATCTCAACTGCGTTGTCACCCCTCTTGGTGATTCCATGCAACGTGTTGCTTCCTGTTTCACCGAAGCCTTAAGTGCAAGACTCGCAGCAACTCTAACCACCGCCGCAGCGGCCGTCTCCAATTCCAAACCAACCTTCTCTATTTACCCACCCAACTCCGTAGAAATCCTCAAAATTTACCAAATTGTCTACCAAGCTTGCCCTTACATAAAATTCGCCCATTTCACCGCCAACCAAGCCATTTTCGAGGCATTCGAAGCCGAAGAGCGCGTCCACATCATCGACCTAGACATCAATCAGGGCTATCAATGGCCAGCTTTCATGCAAGCCTTAGCAGCCCGACCCGGCGGGGCCCCGTTCCTCAGGATAACGGGTGTCGGATCATCCATAGAGTGTGTAAGGGAAACGGGTCGGTGTCTAACAGAATTGGCTCATTCTCTTCACATCCCATTTGAGTTTCACCCAGTTGGGGAGCATCTGGAAGACCTGAAGCCCCACATGTTCAACCGTCGGGTCGGGGAGGCGTTGGCCGTGAATTCGGTGAACCGGCTCCACCGGGTACCCGGGAATTGCCTTGGAAACTTGATAGCAATGATAAGAGACCAAGCACCAAACATAGTGACACTGGTGGAGCAAGAAGCCAGCCATAATGGGCCATATTTTCTGGGTAGGTTTCTGGAGGCATTGCACTATTACTCAGCCATATTTGATTCCTTGGACGCCACGTTTCAGTCGGAGTCGCCGCAGCGGGCGAAGGTGGAGCAGTATATATTTGCGCCGGAGATAAGAAACATAGTGGCTTGTGAAGGAGCAGAGAGGATTGAGAGGCATGAGAGATTGGAGAAATGGAGGAAGATCATGGAAGGGAAGGGATTCAAAGGGGTGCCATTGAGTCCGAACGCGGTGACTCAGTCGAAGATATTGCTGGGATTGTATTCGTGTGATGGGTATAGGTTGACGGAGGACAAGGGTTGCTTACAGCTGGGTTGGCAAGATAGAGCCCTCATTGCTGCCTCTGCATGGCGCTGTTG 1967 0.484 MNSLCGSSVSLKSEKSTSDSNKKSGTESSDLEQSSLTPPSLNLPSLKSELDGDVEVQSPDSSSLWESFLYDQLEPDFMITSPVRNVASSQASTYNYAQAMQVQSLSGCSPPRFGTFNSSHKEKGLSPLHRVSNSPNNRYMQQHVENLALPAIEEFLVDYHSGDHGLGVGGYSSTQVSDIANSSEWQNSIPSMLDSLTIPNSMTRFCGSVNEESSSSVPAGANSQLSQESHDMYQMGSVATASSLSQVLQQERQHEKHHKQQSHAHPHSLMVPLPIANEQQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNCVVTPLGDSMQRVASCFTEALSARLAATLTTAAAAVSNSKPTFSIYPPNSVEILKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHIIDLDINQGYQWPAFMQALAARPGGAPFLRITGVGSSIECVRETGRCLTELAHSLHIPFEFHPVGEHLEDLKPHMFNRRVGEALAVNSVNRLHRVPGNCLGNLIAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFQSESPQRAKVEQYIFAPEIRNIVACEGAERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLQLGWQDRALIAASAWRC 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01873 655 Pfam GRAS domain family 288 654 IPR005202 -
Bva04g01873 655 MobiDBLite consensus disorder prediction 22 44 - -
Bva04g01873 655 MobiDBLite consensus disorder prediction 207 229 - -
Bva04g01873 655 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 653 IPR005202 -
Bva04g01873 655 MobiDBLite consensus disorder prediction 1 15 - -
Bva04g01873 655 MobiDBLite consensus disorder prediction 1 47 - -
Bva04g01873 655 ProSiteProfiles GRAS family profile. 279 654 IPR005202 -
Bva04g01873 655 PANTHER GRAS FAMILY PROTEIN RAM1 26 653 - -
Bva04g01873 655 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01873 Bva-Chr4 19222144 19224469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01873 282 655 GRAS Transcription Factor Family AT1G66350 44.619 3.34e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva04g01873 GRAS 7.9e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01873 - - tcc:18601063 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01873 04 19222144 19224469 Bva04g01873 04 19222144 19224469 ECH