Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01869 ATGGGTGGTGCTGGGCTTAAGTCCAATCAAGAATCTCAGGTCAGGGTCGGATCCCGGGTTTTTCATTCTGGGGTACTTCTGCATCGCCAGCAGCCGTGGTATCATCAGACAGCAGCTATGGCCCCTAAAAGAGGAGGAAAGGCTCCAGTTGCAGCTGCCAAGAAGAAGCAGGAGAAGGTGGTGAATCCACTATTCGAGAAGCGTCCCAAGCAATTTGGGATCGGGGGGGCATTGCCTCCAAAGAGGGACCTCACCCGTTTTGTGAAGTGGCCCAAGACTGTTCAAAtccagaggaagaagaggatcctcaagcaaagattgaagGTCCCACCAGCTTTGAACCAGTTTACAAAGACCCTTGATAAAAATCTTGCAACAAACCTGTTCAAAATGCTTCTTAAGTACAGGCCTGAGGATAAagctgaaaagaaagagaggctTTTGAAGAGGGCCCAGGCAGAGGCTGACGGAAAGCCTGTTGAAGCAAAAAAGCCTATTGTCGTCAAATATGGTCTTAATCACGTTACCTACCTTATTGAGCAGAATAAAGCACAGCTTGTTGTGATTGCTCATGATGTGGACCCCATTGAACTGGTTGTCTGGCTTCCCGCATTGTGTAGGAAGATGGAAATCCCGTATTGCATTGTCAAGGGCAAGGCCCGATTGGGATCGATTGTCCATAAGAAAACTGCATCAGTTTTGTGCCTGACAACTGTGAAGAATGAAGACAAATTGGAGTTCAGCAAGATCCTTGAGGCTATCAAGGCTAACTTCAACGACAAGTATGATGAGTACAGGAAAAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAGGACCAAGGCAAAGGAAAGGCTCCTTGCCAAGGAAGCAGCTCAGAGGATGACTTA 896 0.4487 MGGAGLKSNQESQVRVGSRVFHSGVLLHRQQPWYHQTAAMAPKRGGKAPVAAAKKKQEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01869 298 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 158 245 IPR004038 -
Bva04g01869 298 ProSitePatterns Ribosomal protein L7Ae signature. 206 223 IPR004037 GO:0042254|GO:1990904
Bva04g01869 298 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 26 296 - -
Bva04g01869 298 PRINTS Ribosomal protein L7A/RS6 family signature 203 213 IPR018492 -
Bva04g01869 298 PRINTS Ribosomal protein L7A/RS6 family signature 213 227 IPR018492 -
Bva04g01869 298 PRINTS Ribosomal protein L7A/RS6 family signature 168 182 IPR018492 -
Bva04g01869 298 PRINTS Ribosomal protein L7A/RS6 family signature 187 200 IPR018492 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 86 103 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 130 143 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 164 184 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 257 277 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 69 86 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 225 249 IPR001921 -
Bva04g01869 298 PRINTS Ribosomal protein L7A family signature 106 125 IPR001921 -
Bva04g01869 298 Gene3D - 90 273 IPR029064 -
Bva04g01869 298 PANTHER - 26 296 - -
Bva04g01869 298 SUPERFAMILY L30e-like 128 269 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01869 Bva-Chr4 19201475 19204167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01869 40 298 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.942 2.21e-166 460
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01869 04 19201475 19204167 Bva04g01869 04 19201475 19204167 ECH
Bva03g00269 03 1635035 1637602 Bva04g01869 04 19201475 19204167 ECH