Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01858 ATGGAGTGGGACTGGAAGGAATTTGCGTGGGATTCGGCTGAGTTAGAGGTATCGAGCGATGGCTTGGGATTGGGAGAGCACAATAAAGAAGGAGCTTCGGtgaatttgaagcttgtagaGAATTGTTATTTGGCTGAAAAATCAGGTTCGGATTCTGCTGCTAAGGACCCAGGAGAATTAAAAACGGCGTCGTCCCCTTCTGGTTCTGGGTCGGCAAAGAGGATTCGAATGAATAATGGATCGCTTAACACGACGTGCTCGGTGGATGGCTGCAACTCTGACCTCAGTAATTGCAGAGACTATCACCGCCGCCACAGGGTCTGTGAGAAACACTCCAAGACCCCTGTAGTGCTTGTAGGGGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGATTTCACTCTctgggggagtttgatgaggTTAAGAGGAGTTGCAGAAAGCGTCTTGATGGCCATAATAGGCGCAGAAGAAAACCTCAGCCACCGTCTCTGTTCATGGCTGCTGAGAAATTCCTGACCAATTATAAAGGACCCAGAATCCTGCATTTCGGTAGTCCTCAGACATGTGCCTATCCTATTATGAGAAATATGTGGCCAGTCACTGCCAAAATTGGAGTTGATTCCATAAGCTATGATCGACGCCAACCTTTGCATAGGATTGACCAACAGGGTCTTATGCATTCCTTTACTAGCGTCACATATGGACAAGATATGCAACTTCCTATTTTTCATGGAAATGACCCTATTGCTGGCTTCAGCAATGAAGCAGTGCCTGTAATTTCCATCAATAAGCCAATATCCGGTGCCATTGCCCCTTCAGCAAGTGGAAAGGGCACCCAGAAGCTGTGTTCTGATGGCAAACCCAGATCTTTCGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACCTCAAGCACAAAGTTCCGGGTTGAGCTTGGTGCAGTCCAGCATCTCCTGCCCTGTACAATCTCCATTACGAGATGAGCATTTTGATGCTGTTGACAAGTACTCATTCTCAGAAAGTGCAAGAGATAAGCCTACTGATCCAGTATTGTTTCTAGAAGCGAACACAAACAACCTTCACTGCAATGGATTGCTGCGTGATGGGTCGTTGGGAAACGGAGAGTCAGTGACACTTCCATTTTTCTGGGAATA 1157 0.4598 MEWDWKEFAWDSAELEVSSDGLGLGEHNKEGASVNLKLVENCYLAEKSGSDSAAKDPGELKTASSPSGSGSAKRIRMNNGSLNTTCSVDGCNSDLSNCRDYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFLTNYKGPRILHFGSPQTCAYPIMRNMWPVTAKIGVDSISYDRRQPLHRIDQQGLMHSFTSVTYGQDMQLPIFHGNDPIAGFSNEAVPVISINKPISGAIAPSASGKGTQKLCSDGKPRSFDSGCALYLLSTPQAQSSGLSLVQSSISCPVQSPLRDEHFDAVDKYSFSESARDKPTDPVLFLEANTNNLHCNGLLRDGSLGNGESVTLPFFWE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01858 385 Gene3D - 77 147 IPR036893 GO:0003677|GO:0005634
Bva04g01858 385 Pfam SBP domain 86 159 IPR004333 GO:0003677
Bva04g01858 385 ProSiteProfiles Zinc finger SBP-type profile. 83 160 IPR004333 GO:0003677
Bva04g01858 385 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 22 385 - -
Bva04g01858 385 SUPERFAMILY SBT domain 85 165 IPR036893 GO:0003677|GO:0005634
Bva04g01858 385 MobiDBLite consensus disorder prediction 49 76 - -
Bva04g01858 385 MobiDBLite consensus disorder prediction 62 76 - -
Bva04g01858 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 385 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01858 Bva-Chr4 19135268 19137794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01858 86 216 SBP-box Gene Family AT5G50670 54.015 9.24e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva04g01858 SBP 8.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01858 - - gmx:100798317 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01858 04 19135268 19137794 Bva04g01858 04 19135268 19137794 ECH