Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01833 ATGGAAGGGGAAGTTgatagagaagaaagagacCCAGAAAGCAATCCACTCAACGAGCCACTATTAAAGAGGTCTCGGACACTATCTTCCAATCCACTTGCCATGGTCGGAGCTAAAGTTTCCTATATAGAAAGCTTGGACTACGAGATCAATGAGAATGATctattcaagcatgattggaGGAGCAGATCAAAAGTTCAAGTATTGCAGTACATATTCTCGAAATGGACACTGGCATTCCTTGTTGGACTTCTTACTGGTATAATAGCCACTCTCATCAATCTTGCTATTGAGAACATTGCAGGTTACAAGCTTCTCGCTGTGGTTGGATACATCCAGGAGGACAGGTACCTGGCAGGGTTCTTATATTTCACCGGCTTCAATTTTGTTCTAACTTTGGTTGCTGCTGttctgtgtgtgtgttttgCACCCACGGCAGCTGGACCAGGCATCCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGTCACAACATTGCTAGTGAAGATATTTGGAAGCATTGGAGCCGTCTCTGCTGGCCTAGATTTAGGAAAGGAAGGACCCTTGGTACATATTGGCAGCTGCATTGCTTCCTTACTAGGCCAAGGGGGCCCTGACAATTACCGCGTCAAATGGCGTTGGCTTCGCTATTTCAACAATGATCGCGACCGTCGTGACCTTATTACTTGTGGCTCTTCTTCAGGGGTTTGTGCAGCTTTTCGGGCCCCTGTTGGTGGTGTTCTCTTCGCACTTGAAGAAGTGGCAACCTGGTGGAGAAGTGCTCTCCTTTGGAGAACTTTCTTCAGCACAGCTGTGGTGGTGGTAGTGCTCAGAGCCTTCATTGAAATATGCAATTCTGGGAAATGTGGTCTTTTTGGACAAGGTGGACTGATCATGTTTGACGTGAGCAATGTTACTGTGAGGTACCATGTGATGGATATCTTCCCCGTCGTAATCATTGGAGTCATTGGTGGGTTATTGGGTAGCCTTTACAACCATCTCCTCCACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAGGGAAGAATGCATAAGCTCTTCCTCAGTCTTGCTGTTGGCCTCTTCACCTCCCTCTGCCAATATGGCCTTCCTTTCCTAGTAAAATGTACTCCCTGTGGTTCCTCCCTTCCAGAGTCCGAATGTCCCACCAATGGACGGTCAGGAaactttaaacaatttaattgcCCCAACGGCTACTACAATGATCTTGCTACTCTACTGCTTACTACTAATGATGATGCTGTTCGAAACATATTCTCAAGCAGCACTCCTTCGGAATTTCACACCTTCTCCctccttattttctttgcaCTCTATTGCATATTAGGATTGATTACTTTTGGAATTGCTGTGCCATCTGGACTCTTCCTCCCAATTATTCTCATGGGCTCGGGTTATGGCCGCCTTCTTGGCATGCTAATGGGACCCCAAACAAACATTGATCAAGGGCTTTTTGCTGTTCTTGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACTGTCTCCCTTTGTGTCATCTTCCTTGAACTAACTAACAACCTTCTCCTTCTACCTATAACAATGATTGTCCTGTTAATAGCAAAGACAGTTGGAGATTGTTTCAACCCAAGCATCTATGAGATTATACTACATTTGAAAGGCCTTCCTTTCTTGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACAGTTGGTGAGCTTGTTGATGTTAAGCCAGAAGTTGTTGCCCTCCAAGGAGTCGAAAAGGTAGCTTGTATAGTAGATGTGTTGAAAAACACCACGCATAATGCTTTTCCAGTCGTGGATAATGGAGTGATACCACCAACAGGACCGGCTGACGGGGCAAAGGAACTACATGGACTGATCCTACGAGCTCACCTCATTCAAGCGCTAAAGAAGAAGTGGttcttgaaagagaaaagaagaaccGAGGAATGGGaagtaagagaaaaatttaccTGGGTAGAACTGGCTGACAGAGAAGGGAATATTGAACAGGTGGCTGTGACAAGCGAGGAAATGGATATGTTTATTGATCTACATCCTCTCACCAATACTACTCCCTTTACAGTGTTAGAGAGTATTTCAGTGGCAAAAGCTATGGTTCTATTTCGGCAAGTGGGACTGCGCCACCTGCTTATTGTACCAAAGTATCAAGCATCAGGGGTATCTCCGGTGATTGGGATCTTGACCAGGCAGGACTTTCTGGCCTGTAATATTCTACAAGCCTTTCCTCACCTGGAAAAGTCTAAGGTAAGAGAAAAGAGGAACTG 2318 0.431 MEGEVDREERDPESNPLNEPLLKRSRTLSSNPLAMVGAKVSYIESLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLAFLVGLLTGIIATLINLAIENIAGYKLLAVVGYIQEDRYLAGFLYFTGFNFVLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGVTTLLVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGQGGLIMFDVSNVTVRYHVMDIFPVVIIGVIGGLLGSLYNHLLHKVLRLYNLINQKGRMHKLFLSLAVGLFTSLCQYGLPFLVKCTPCGSSLPESECPTNGRSGNFKQFNCPNGYYNDLATLLLTTNDDAVRNIFSSSTPSEFHTFSLLIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGMLMGPQTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELVDVKPEVVALQGVEKVACIVDVLKNTTHNAFPVVDNGVIPPTGPADGAKELHGLILRAHLIQALKKKWFLKEKRRTEEWEVREKFTWVELADREGNIEQVAVTSEEMDMFIDLHPLTNTTPFTVLESISVAKAMVLFRQVGLRHLLIVPKYQASGVSPVIGILTRQDFLACNILQAFPHLEKSKVREKRN 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01833 772 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01833 772 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01833 772 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01833 772 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01833 772 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01833 772 ProSiteProfiles CBS domain profile. 699 763 IPR000644 -
Bva04g01833 772 MobiDBLite consensus disorder prediction 1 20 - -
Bva04g01833 772 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 751 - -
Bva04g01833 772 CDD ClC_6_like 44 566 - -
Bva04g01833 772 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 767 - -
Bva04g01833 772 SUPERFAMILY Clc chloride channel 53 568 IPR014743 -
Bva04g01833 772 Gene3D - 587 739 IPR046342 -
Bva04g01833 772 Gene3D Clc chloride channel 66 568 - -
Bva04g01833 772 Pfam CBS domain 701 751 IPR000644 -
Bva04g01833 772 SUPERFAMILY CBS-domain pair 570 751 IPR046342 -
Bva04g01833 772 PANTHER CHLORIDE CHANNEL PROTEIN 10 767 - -
Bva04g01833 772 SMART cbs_1 702 755 IPR000644 -
Bva04g01833 772 SMART cbs_1 588 647 IPR000644 -
Bva04g01833 772 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01833 772 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01833 Bva-Chr4 19038664 19042957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01833 8 766 Ion Channels AT3G27170 80.896 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01833 K05016 - gmx:100788620 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01833 04 19038664 19042957 Bva03g00305 03 1821265 1826240 BWGD
Bva04g01833 04 19038664 19042957 Bva04g01833 04 19038664 19042957 ECH