Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01820 ATGAAGAGTTTCCATGCAATCCACCCTGCCCAGCACTCCTGTTCCACAAGATTTTTCACAACCAGAAGGAATCAatctcttcttcctccaaagcttttcttttgccAGGCAAAATCTGACGGGACAATCAACTTAAAAGTGATGCCTCCAACCTTGTTAGTagcagaaaaggaagaagcaaAGGCTGTTTTAACCttgttttttaagaaacaaGGTTTGAGCAATGCAGTTGCTACAAGGACAATCAACAAGTCAGATCCTTTTATTGATCATCTTCTCTCGAGGCTTCACACTAAACACAAAACTCGATATCTAGTCGGTAGAGAACTTACAACACTTGAAATTAGGGATGCTTTTATTCCTTATCTTGACTCCCTTCTTGAAGAGCATGGAGACACTCTGGTGGATGTAGTGGAGAACTATCCAAACCCACCTCCACCTGTTAAAGAAAAGCCAACTCTGCCTGTTTCTCCCCCTAGTGCAGCTGTGGACTCTAAGAAGCTCAAAGCCATGTCTCGAGTGAGCGAAATCGACCCAGCTGGAAAGCTTCGCCCTCATATTATCTATCTCATGGAGCTTGGCATGGATATTGAGCAGATAAAAAGCATTATCCGAAGATTCCCATCTTTTGCGCACTATAGCTTGGAAGGGAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGGGTGCCAAAAGAAGACATTTCCACCATCCTGACTAAAAGGCCTCAATTATGTGGGATTAGTCTCtctaaaaatcttaaacccACCATGAAGTTCTTAGAAACATTGGGTGTTGACAAGAAACAATGGGCAAAGGTGATCCACCGCTTTCCAGCTCTTCTAACTTACAGCAGGCAGAAGCTCAAGGCAAGCATTGATTTCCTCTATGAACTGGGCCTTTCAGAAGAGAATGTAGGGAAGATTTTAACTCGCTGCCCTAATATTATTAGTTACAGTGTAGAGGACAATCTACGCCCTACAGCTAACTACTTTCGTTCCTTGGGGGTTGATGTTGGCAATCTTCTCTTCAGATGCCCACAAAATTTTGGCCTTAGCATTGAGTCCAATATAAAGCCTGTAACAGAGTTTTTCTTGGAGAGAGGATACACTTTGGAGGAAGTTGGGACCATGATTTCAAGATATGGAACATTATATACGTTTAGCTTGTCTGAGAATTTGATTCCAAAATGGGAGTTCTTTCTGACCATGGATTACCCAAAATCAGAGCTGGTTAAGTTCCCTCAATATTTTGGTTACCGTTTAGATGAGAGGATTAAACCGAGATATAAACGCATGAAAGCATCTAGGGTGAGGTTGCTGCTGAACCAGGTTTTATCTCTGTCAAGTGGTGACTTTGAAAAGGccttggaaaagaaaatcaagaaaatgcaAGCCGATCAGGATTTTGGGAATAGCAGCAAAGATGATCAATCTGATGATAAAAAATG 1454 0.3893 MKSFHAIHPAQHSCSTRFFTTRRNQSLLPPKLFFCQAKSDGTINLKVMPPTLLVAEKEEAKAVLTLFFKKQGLSNAVATRTINKSDPFIDHLLSRLHTKHKTRYLVGRELTTLEIRDAFIPYLDSLLEEHGDTLVDVVENYPNPPPPVKEKPTLPVSPPSAAVDSKKLKAMSRVSEIDPAGKLRPHIIYLMELGMDIEQIKSIIRRFPSFAHYSLEGKIKPVVEFFLELGVPKEDISTILTKRPQLCGISLSKNLKPTMKFLETLGVDKKQWAKVIHRFPALLTYSRQKLKASIDFLYELGLSEENVGKILTRCPNIISYSVEDNLRPTANYFRSLGVDVGNLLFRCPQNFGLSIESNIKPVTEFFLERGYTLEEVGTMISRYGTLYTFSLSENLIPKWEFFLTMDYPKSELVKFPQYFGYRLDERIKPRYKRMKASRVRLLLNQVLSLSSGDFEKALEKKIKKMQADQDFGNSSKDDQSDDKK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01820 484 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 21 468 - -
Bva04g01820 484 Pfam mTERF 168 361 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 Pfam mTERF 299 455 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 MobiDBLite consensus disorder prediction 142 161 - -
Bva04g01820 484 PANTHER CGI-12 PROTEIN-RELATED 21 468 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 165 196 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 341 372 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 237 268 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 273 303 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 308 339 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 SMART mt_12 377 408 IPR003690 GO:0003690|GO:0006355
Bva04g01820 484 Gene3D Transcription termination factor 3, mitochondrial 245 464 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva04g01820 mTERF 4.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01820 K15032 K12177 gmx:100781900 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01820 04 18961616 18964524 Bva04g01820 04 18961616 18964524 ECH