Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01810 ATGGCTGGAGGTGTTGTTCAGCAGTTAAGGAGGAAACTCCAGTCTCAAACTACtTCCCCTTCCTTTTTGTCGTCAATCATTTCAAAAAAACATGATGCTGGCTCAACTGGCTCAAGGTCCTTAAGAGCAATTGCATTACTTGGGGCTGGTGTATCTGGTCTTTTGAGTTTTACAACAACAGCATATGCTGATGAAGCTGAGCATGGCTTGGAATGTCCAAATTATCCATGGCCTCACAAGGGAATTCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACGCAAGTCTGTGCTTCCTGCCACTCTATGTCTTTGATATCATATCGTGATTTGGTTGGTGTTGCTTATACAGAAGAGGAGGTTAAAGCTATGGCAGCTGAGATTGAGGTAGAAGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGACCGCTTCCCTCAGCCATATGCTAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTATCACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCCCTTCTAACTGGTTACCATGACCCCCCTGCTGGTGTTTCGATTCGAGAGGGGTTGCACTACAATCCCTATTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGTGCCGTTGAATATGAAGATGGTATTCCTGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGACGTTCTTATCTTGGGCGGCCGAACCGGAGATGGAGGAGAGAAAACTGATGGGTTTCAAGTGGATATTTGTTTTATCTCTGGCACTCCTTCAGGCTGCATATTATCGTCGCTTGAGGTGGTCAGTTCTGAAGTCTCGCAAGCTGGTTCTCGATGTTGTCAACTA 920 0.4543 MAGGVVQQLRRKLQSQTTSPSFLSSIISKKHDAGSTGSRSLRAIALLGAGVSGLLSFTTTAYADEAEHGLECPNYPWPHKGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYHDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01810 306 PRINTS Cytochrome C1 signature 140 160 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 173 197 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 261 276 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 75 94 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 95 114 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 222 241 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 242 261 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PRINTS Cytochrome C1 signature 211 222 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 ProSiteProfiles Cytochrome c family profile. 89 196 IPR009056 GO:0009055|GO:0020037
Bva04g01810 306 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 261 305 IPR021157 -
Bva04g01810 306 Pfam Cytochrome C1 family 77 293 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 26 306 - -
Bva04g01810 306 SUPERFAMILY Cytochrome c 70 260 IPR036909 GO:0009055|GO:0020037
Bva04g01810 306 Gene3D - 66 261 IPR036909 GO:0009055|GO:0020037
Bva04g01810 306 PANTHER CYTOCHROME C1 26 306 IPR002326 GO:0009055|GO:0020037
Bva04g01810 306 Gene3D - 262 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01810 Bva-Chr4 18916571 18921625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01810 1 306 Chloroplast and Mitochondria Gene Families AT3G27240 85.761 0.0 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01810 K00413 - fve:101298147 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01810 04 18916571 18921625 Bva04g01810 04 18916571 18921625 ECH