Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01792 ATGGGAAGACAGCCTTGTTGTGATAAGATTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAACTTATGAACTTCATCCTCAACAATGGCATCCATTGCTGGCGAATGGTTCCCAAGCTTGCAGGCTTATTAAGATGTGGGAAAAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACAGAAACAGAAGAGGATCAGATTATTCAACTGCATTCACGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAAGTCAAGAACCATTGGAACACAAGAATCAAGAAGAGGTTAAAGCTCCTTGGTCTGGACCCTGTGACCCACAAGCCAATTGAgcaaaaggaacaaaataatGACAGAAGCATGACAACCCATCAGCCAATGTCTGCAGAAGGGtatgaagaaaatatgggaATAAAGTCGTTGGAAAGCGATGCGACAGAAGAAATGccaaaaacagaaataaaaatagaagaaaacaaggtGATATGGGATGATACTACAGAACTTATAAACAATTATGAACTGCTATGTTCAAACTTGGACTTGGGATCATGGATGAACCAAGAAACCAACACCAGTACTAGTTCTTACAGTAGTTCTTCATTCTCCCTGGATGATTCTAGCCACCTTTCTATGGGTGAATCCCCCAATCTTCAGGAAATCTCCTTGCAGCAATGGATTGATAGCATGGACCCTATTCTTTCATGGGATAGCTTCAATCCTCTTGAACaagatcttttctttttggaaaacCGGCCATA 818 0.3826 MGRQPCCDKIGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTETEEDQIIQLHSRLGNRWSKIAAHFPGRTDNEVKNHWNTRIKKRLKLLGLDPVTHKPIEQKEQNNDRSMTTHQPMSAEGYEENMGIKSLESDATEEMPKTEIKIEENKVIWDDTTELINNYELLCSNLDLGSWMNQETNTSTSSYSSSSFSLDDSSHLSMGESPNLQEISLQQWIDSMDPILSWDSFNPLEQDLFFLENRP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01792 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 248 - -
Bva04g01792 272 CDD SANT 16 61 IPR001005 -
Bva04g01792 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva04g01792 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva04g01792 272 MobiDBLite consensus disorder prediction 209 232 - -
Bva04g01792 272 Gene3D - 69 147 - -
Bva04g01792 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva04g01792 272 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Bva04g01792 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva04g01792 272 Gene3D - 11 67 - -
Bva04g01792 272 PANTHER MYB DOMAIN PROTEIN 40 2 248 - -
Bva04g01792 272 CDD SANT 70 110 IPR001005 -
Bva04g01792 272 SMART sant 13 63 IPR001005 -
Bva04g01792 272 SMART sant 66 114 IPR001005 -
Bva04g01792 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva04g01792 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01792 Bva-Chr4 18819161 18820564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01792 1 143 MYB Transcription Factor Family AT5G16600 68.919 3.57e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g01792 Myb_DNA-binding 5.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01792 K09422 - gmx:100819471 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01792 04 18819161 18820564 Bva04g01792 04 18819161 18820564 ECH