Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01789 ATGGAGGGTACTGGGCCTGATAAGAAAAATCAGTCACAGGAAAACAATGTAGAAATTGAATGTCAAACATCACCTGAAGTAGAAAATAATGTGGAGCAGGAGGGTCAGAGTCACAAGGGTTCCTCTCTTGCAGATAGTATAATGGCAGTTGATATGGAGCATGAGTGTCCAAGCCCAAATGCTTGTTCTATTGGTGACAGTCAGATGGATGTTATTGATGAGAGCCAAAAGTCAGAAATTCGCTCTGATAACAAGTTCCAGATTGATTTGGATAGTAGACAGTTGTCCCAGAGCCCAACCATCCccattattaatatattaaacacCAATGCTGCTGAGAAAGACAGGGAGGAAATATATGTGGAACCAAAAATTGGCATCGAATTTGACTCAGAAGACCAAGCATACAAGTGTTACAGTAGGTACGCTGTTTTGCAAGGTTTCAGCATAAGAAAAGATTTTCTTAACAAAAGTAGGGTAAGCGGTGCAGTGGTATCACGGAGATATACTTGTTCTAGACAGGGTTATCGATCTAACAAACAAAACGGGGGCATGAGAAAGTCTCAGCAGGAAACAAGAACTGGTTGCTTGGCCCATATGACCATTGCTCGTCAGCCTAATGGCAAGTACAGTGTCTTGCATCTTGAAACAGAGCACAATCATGAGCTTGTAACTCCCTCTACCGCACATATGTTACCATCACATAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCTACCATCATGAATGATTCTGGGTTGGACGGGGTACCAAAACTTGGGATGGGATTTGACACAGAAGATCAtgcttatgaattttataatgcATATGCTGGACGTGTTGGTTTCAATGTTCGGAAAGATTATGTAAATAAGAGCAAAGTTGATGGTGGTGTAGCATCTAGAAGGTTTCTTTGCTCCAGAGAAGGTTTTCGGCAGAAAGACAAACGGGACACAAACATAAAGAGACCTCGAAAGGAAACTAGAACTGGATGTTCAGCACAACTGGTAATTTCTCGTCAACCTGATGGGATATATCGTGTGACTCATTTTGAAGAAAAGCATAATCATGAGCTTGTTGCTACATGTATTGTTCACACATTACGATCACAAGAGAGATTAGGGACAACTCAAGCTGTTGAAGATGGTTCCAATGTGCTTCATAAGTCAGCCTCTGAATCATTTCACAACACTGTTGGAGTTTTTAATGATCCAGGTTATGGTCCCATAAATTATGAGCATAAACTACCTTTCAAACGTACAAGAGATATGAAAGATGGAGAAGTTGAAAAGATGAAGCAACACTTCCAAATCAAGCGTTCAAAaaatccttctttcttttatgcttttcaGCTTGATGCTGATGTTgaaataactaatatattttGGGCCGATGCAAAGATGATAGTAGACTACAATTACTTTGGTGATGTTGTTTGCTTTAATAGTAGTTACAGATATTATAAAGACTCCCGCCCTTTTACTCCATTCCTTGGTATAAATAATCACAAGCAAATGGTCATCTTTGGGGCAGCACTTTTATATGATGAAACCATTGAATCTTTCAAGTGGTTGTTTCGAATTTTCATAGAAGCCATGTCGGGAAGAAAGCCAAAGACAATCCTTACAGGTCAAGATGCGGTAATAGCCGAAGCAATTAATTCCATATTGCCTGAGGCAACTCTCCGAATTTGTGCATGGCATGTGTATCAAGATGTGCTCAAGCAACTGAATCACTTACTTGTGGGATCTAGTTCTTTTGTTAATGATTTGAGCAGTTGCTTTTTTGATCACGAGGAAGAGGAGGATTTTGTCAATGCGTGGAATGCTCTGCTGGACATGTATGATCTGAGGGAAAATGAGTGGCTGcatcaaatatttgaaagcAGAGACAGATGGGCCATAGCATATGGAAGACATATTTTCTGTGCTGATGTAACAAGTGTTTTACTGTTAGAAAATCATACAGGTAACTTGAAGAAGTGCCTGAAGAATGATTATGATGTGCTCCCTTTTTTCAAGTATCTCAGTAAAGTGATGAATGATTGGAACTACAAGGAAATAGAAGCCAACTATGGCATGAGGCAGCATGTTCCTGAACTGATGGGGGATGTGATTTTGTTGAAGCATGCGAGGGATCCATATACGCCCAAGATATTTGAATTGTTCCAGCAAGAATATGAAACTTGTTTAAATCTTGTGGTAAAGGATAGTAGGGAGATTGGATCATTGTATGAATATAAAGTTAGCTTATATGAACAAGTTCGAGAGTATAGAGTAACCTTTGATCCATCTGATGAGACAGTGACCTGCAGTTGTATGAAATTTGAGTATATGGGAGTGTTATGCAGCCATGCATTGAAAGTTCTGGATTATAGGAATGTAAGGATACTTCCTGCACGGTATATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTG 2441 0.3834 MEGTGPDKKNQSQENNVEIECQTSPEVENNVEQEGQSHKGSSLADSIMAVDMEHECPSPNACSIGDSQMDVIDESQKSEIRSDNKFQIDLDSRQLSQSPTIPIINILNTNAAEKDREEIYVEPKIGIEFDSEDQAYKCYSRYAVLQGFSIRKDFLNKSRVSGAVVSRRYTCSRQGYRSNKQNGGMRKSQQETRTGCLAHMTIARQPNGKYSVLHLETEHNHELVTPSTAHMLPSHKRLSFAQAVEATIMNDSGLDGVPKLGMGFDTEDHAYEFYNAYAGRVGFNVRKDYVNKSKVDGGVASRRFLCSREGFRQKDKRDTNIKRPRKETRTGCSAQLVISRQPDGIYRVTHFEEKHNHELVATCIVHTLRSQERLGTTQAVEDGSNVLHKSASESFHNTVGVFNDPGYGPINYEHKLPFKRTRDMKDGEVEKMKQHFQIKRSKNPSFFYAFQLDADVEITNIFWADAKMIVDYNYFGDVVCFNSSYRYYKDSRPFTPFLGINNHKQMVIFGAALLYDETIESFKWLFRIFIEAMSGRKPKTILTGQDAVIAEAINSILPEATLRICAWHVYQDVLKQLNHLLVGSSSFVNDLSSCFFDHEEEEDFVNAWNALLDMYDLRENEWLHQIFESRDRWAIAYGRHIFCADVTSVLLLENHTGNLKKCLKNDYDVLPFFKYLSKVMNDWNYKEIEANYGMRQHVPELMGDVILLKHARDPYTPKIFELFQQEYETCLNLVVKDSREIGSLYEYKVSLYEQVREYRVTFDPSDETVTCSCMKFEYMGVLCSHALKVLDYRNVRILPARYILKRWTKDARV 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01789 813 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 246 813 IPR031052 GO:0006355
Bva04g01789 813 Pfam FAR1 DNA-binding domain 272 360 IPR004330 -
Bva04g01789 813 Pfam FAR1 DNA-binding domain 139 224 IPR004330 -
Bva04g01789 813 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 75 239 IPR031052 GO:0006355
Bva04g01789 813 MobiDBLite consensus disorder prediction 1 42 - -
Bva04g01789 813 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 75 239 - -
Bva04g01789 813 SMART 26again6 769 796 IPR006564 GO:0008270
Bva04g01789 813 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 246 813 - -
Bva04g01789 813 Pfam MULE transposase domain 478 571 IPR018289 -
Bva04g01789 813 Pfam SWIM zinc finger 758 793 IPR007527 GO:0008270
Bva04g01789 813 ProSiteProfiles Zinc finger SWIM-type profile. 758 794 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01789 Bva-Chr4 18789615 18792056 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva04g01789 MULE 1.4e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01789 K17604 - gmx:102659753 1127.46