Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01747 ATGGACTCATTCGTAAACGACCCTGTCGACGAAGGAGAGTCTAACGATGTAAGGACCTTTGGCCACAGAGAAGACGGCGACAAGCCCAAATCTCTTACCGGCGATGGAGCCAGTCCCGGaaaaatatttataggtGGTTTAGCTAGAGAAACGACGATTGACCAATTTATCAAGCATTTTGGTGACTATGGTGAGATTACGGATTCTGTGATTATGAAGGATCGGAAAACTGGGCAACCTCGTGGATTTGGGTTTATAACCTACGCAGATCCCTCTGTGGTTGATAAAGTTATTGAGGACACTCATATTATCAATGGAAAGCAAGTTGAAATTAAGCGGACAATACCAAGGGGAGCTATTGGTTCTAAGGATTTTAGGacgaagaaaatttttgtggGTGGAATTCCTTCAACTGTGACTGAAGATGAGTTTAGAGACTTCTTTACACAATATGGAGAGGTCCAAGATCACCAGATAATGCGGGACCACTCCACTAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGAAGACCTCTTAGCTAAGGGGAACAAGATTGAGTTTGCCGGGGCTCAgGTGGAAATCAAGAAGGCTGAGCCAAAAAAGCCAAACGCACCACCACCATCTTCCAAACGCTATAATGACTCAAGATCTTCATTCAGTGGTGGATATGGAGATGGTTATGATGAATTTAGCAGTAGCTTTGGTGTTGGGGATTATAGATCAGGTGGTGTCTATGGTAGTAGGGTTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGGTATGGATATGCCGGTGCCATGGGGCCGTATAGAGGAGACTCTTCCCTTGGATACTCTGGTCGTTACGGAGGAGGCTTTAGCAGAGGTTATGATTTTGGAGGTTATGGTGGACTGAGTGACAACTATGGTGGATATGGTGGTGGCAGTGCTCCTTCTGGCGGTGCCTATGGAGGCGGCTATGATGCCAGCTTAGGGGGTGGATATGGAGGAGGTAGTGGAGGTTCCTTTTATGGAAGTAGAGGAGGATACGGAGGAGGTGCAGGAAGTGGTCGATACCATCCTTATGGAAGATA 1097 0.454 MDSFVNDPVDEGESNDVRTFGHREDGDKPKSLTGDGASPGKIFIGGLARETTIDQFIKHFGDYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAIGSKDFRTKKIFVGGIPSTVTEDEFRDFFTQYGEVQDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLAKGNKIEFAGAQVEIKKAEPKKPNAPPPSSKRYNDSRSSFSGGYGDGYDEFSSSFGVGDYRSGGVYGSRVGAYGGYGSEFGGYGYAGAMGPYRGDSSLGYSGRYGGGFSRGYDFGGYGGLSDNYGGYGGGSAPSGGAYGGGYDASLGGGYGGGSGGSFYGSRGGYGGGAGSGRYHPYGR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01747 365 Gene3D - 121 236 IPR012677 -
Bva04g01747 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Bva04g01747 365 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 365 - -
Bva04g01747 365 SUPERFAMILY RNA-binding domain, RBD 37 118 IPR035979 GO:0003676
Bva04g01747 365 MobiDBLite consensus disorder prediction 1 37 - -
Bva04g01747 365 MobiDBLite consensus disorder prediction 11 31 - -
Bva04g01747 365 SMART rrm1_1 129 202 IPR000504 GO:0003723
Bva04g01747 365 SMART rrm1_1 41 112 IPR000504 GO:0003723
Bva04g01747 365 Gene3D - 40 119 IPR012677 -
Bva04g01747 365 MobiDBLite consensus disorder prediction 203 224 - -
Bva04g01747 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Bva04g01747 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Bva04g01747 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 365 - -
Bva04g01747 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Bva04g01747 365 SUPERFAMILY RNA-binding domain, RBD 124 235 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01747 Bva-Chr4 18464136 18467289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01747 3 194 Eukaryotic Initiation Factors Gene Family AT1G71770 24.880 2.56e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01747 K12741 - gmx:100813165 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01747 04 18464136 18467289 Bva04g01747 04 18464136 18467289 ECH