Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01740 ATGGCCTCTACTTCTAGCTACTCCAGTTCTCCTTGTGCAGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCAGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCTCAGAAATTTGCCAATGTTCACAAAATATTTGGTGCAAGCAACGTGAGCAAGCTCCTGAATGAAGTGCCACCCCATCAAAGAGAGGATGCAGTGAATTCTCTGGCCTACGAGGCCGAAGCGCGCATCAAAGATCCTGTCTATGGCTGCGTTGGTGCCATTTCAGTTCTGCAGAGACAAGTCATGAGGCTTCAAAAGGAACTAGATGCCACAAATGCAGATTTGTTCCGTTACACCTGCAATGAAATGCCAACTACTCAACCTGCAGGTGCAGGAATTAGAAGGATCAATGAAGCTGCAGCAGGAGCTTCATCTTATCCTCAATCTtctgtttattattataacccTTCTCCTTGGAATAATGATCTTTGTGGGGATGGCTATCAGAGAGGAGGAGATAATAACatgta 518 0.4402 MASTSSYSSSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVMRLQKELDATNADLFRYTCNEMPTTQPAGAGIRRINEAAAGASSYPQSSVYYYNPSPWNNDLCGDGYQRGGDNNM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01740 172 Coils Coil 90 110 - -
Bva04g01740 172 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Bva04g01740 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 4 160 - -
Bva04g01740 172 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Bva04g01740 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01740 Bva-Chr4 18435950 18438006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01740 5 114 AS2 family AT3G27650 84.545 6.96e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva04g01740 LOB 2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01740 - - var:108328620 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01740 04 18435950 18438006 Bva04g01740 04 18435950 18438006 ECH
Bva03g00421 03 2449170 2451084 Bva04g01740 04 18435950 18438006 ECH