Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01729 ATGCAGATCTTCGTGAAAACTTTAACGGGGAAGACCATAACCCTAGAGGTTGAGTCCTCTGATACGATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTTGCTGACTACAATATCCAGAAGGAATCCACCCTCCACCTCGTTCTCAGGCTTCGTGGTGGCGCCAAAAAGCGTAAGAAGAAGACCTACACTAAGCCCAAGAAGATCAAgcacaaaaagaagaaggtcAAGCTCGCCCTTCTTCAGTTTTACAAGGTCGATGATTCTGGCAAGGTTCAGAGGTTGAGGAAGGAGTGCCCCAATGCTGAATGCGGCGCTGGAACTTTCATGGCTAACCATTTTGATAGGCATTATTGTGGGAAGTGCGGATTGACCTATGTTTACCAGAAGGCAGGCGGTGATTA 470 0.4766 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLALLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01729 156 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Bva04g01729 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bva04g01729 156 PANTHER UBIQUITIN 1 146 - -
Bva04g01729 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bva04g01729 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bva04g01729 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bva04g01729 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bva04g01729 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva04g01729 156 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva04g01729 156 CDD Ubl_ubiquitin 1 76 - -
Bva04g01729 156 Gene3D - 1 80 - -
Bva04g01729 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva04g01729 156 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Bva04g01729 156 Pfam Ribosomal protein S27a 103 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bva04g01729 156 Gene3D - 81 154 IPR038582 -
Bva04g01729 156 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01729 Bva-Chr4 18377830 18378449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01729 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.455 8.91e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01729 K02977 - tcc:18609501 276.944