Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01728 ATGCAACTGAACATTTGCAACAGCCGAGTGCGCGAGTACGGAAAGATTTGCAGGTCATGTTTTGTTCTGCatgttcttcttttctttGTACCAAAGTACATTATCATTTTGCTCAGACACAGCCTAGGATCAGCTTCAGAGCTTGAGAACCTATGTCATTGCAAAGCTGAGAGCCTGAAGATGGATAAAGATGACTCTAGTTTGGAGAGTGAAAACTTTGATTGGAACACTGAAGATGAGCTGGAAGTTGAGAATTTTCAATCTTCATCTTCGTGTTTAACTGTTCCAAATGGAGATGGTATTACTGGGTCTGCAGAGGGAATCTCATCTGCAGGTTCATCCAATTCCAAGATATATGATCACTTTGTTGGAATGGGATTTTCTGAAAAAGTGGTCTCCAGAGTAATTCAGGAAAATGGTGAGGACAATGTTGATTTAATACTCGAAACTCTCCTTACATACTCAGTTATAGAAACTCCTCCACGGCAACCACAGCAAATTGAATCAGATCCCTGCTCTTCAGACTATGAAGGGAGCTTTCTGGATGATTTCTCAGATATCGATAGCATCTCTGAGAATGAGGGAATTACAAATTCTGTATCTGAGAATGACGGAAAATTATTATCCTTGGTGAATATGGGGTACGAGGTGGAGGAGGCCTCAATTGCCTTAGAAAGATGTGGTCCGGACTCCTCCCTTGCTGAACTAATAGATTTTATATGTGCTGCTCAAGTGGCAAAGTCATCAGATGCCCTTATTCCGAAAGAGAAGCCACGGATCAATAACCTGCCTAAGCCAAAGAAACGAAGTTATTATAAAGAAGAGGTTTTGGGAAGGAAAAAGCCAAGGGCACCCCTGAATGAAGATGATGAGATACTTCGTCTTCCAAAACCAATGATTGGGTTTGGGATTCCCACTGATTCATCCTCCATTACCCATAGAACACTTCCAGAAGCTGCCGTTGGGCCTCCTTACTTCTACTATGAGAATGTAGCACTTGCACCAAAAGGCGTTTGGCAGACAATCTCAAGATTCTTGTATGATGTGGAGCCAGAATTTGTGGATTCAAAGCATTTCTGTGCAGCTGCCAGGAAAAGGGGCTATATTCACAATCTCCCAATTGAGAATAGATTCCCTCTCCTTCCGCTTCCTCCACACACCATACATGAAGCATTACCCCTAACGAGGAAATGGTGGCCTGCATGGGacgaaagaacaaaattaaattgcctACAGACATGTATTGCGAGTGCAAGACTTACTGATAGGATTCGCAAAGCTATTGAAAACTATGATAGAGATCCACCACTGCATGTCCAGAAGAAAGTTATTGATGAATGTCGTAAGTGGAATTTGGTTTGGGTTGGAAGGAACAAGGCTGCACCACTGGAGCCTGATGAAGTAGAATTGCTTTTGGGTTTCCCAAAGAACCACACAAGGGGAGGCGGAATAAGTAGGACTGACAGATATAAATCACTTGGTAATTCATTCCAGGTTGACACTGTTGCATACCACCTGTCAGCCTTGAAGGAATTGTACCCAGATGGTATCAAtatgctttctcttttctctggAATTGGTGGTGCTGAAGTTGCTCTCCATCGGCTTGGTATTCCTCTGAAGACTGTTGTAGCTGTTGAAATATCAGAGGTGAATAGGAATATCGTTAGGAGTTGGTGGGAGCAAACTAATCAGAAGGGAAATTTGATTGACGTGGATGATATTCGCCATTTAGATGGTGATCGGCTGGAGCAGCTGATGAACACATTTGGGGCTTTTGATCTTGTTATTGGCGGTAGTCCATGCAATAACCTAACTGGTAGCAATAGGTACACGAGGGATGGACTTGAAGAAACTGATACATCTCACCCATTTTTCTTGCCACAAAAGGCAAggctttcaaataaaatatgtatctTGACATATTTCTTACCAGTTCTGCCATCTGTTCGGAATAATCGctatagagagagaaagagaaactcTGTTGAATCCACGAGCACTTCTCGCTTCTATTCACCTTTAAACCCTCAAGGCGACTTTGTGAgtAGACTTCTGTTGCCGACTCCCTTGCAATGGCCGCAACTGCAACTGCATCTTCAGTCAGTCCACGATATGCCCCTCCAGACCCAACACTTCCAAAACCATGGCGAGGACTTGTTGATGGTTCAGCAATCAGCTCAAGTAGTGCGAAGTCATAGGTCTGATTTGAATGATAGATATGATAGAAACAACATTGGTGGATCAAACCTTGACGCTGGATCACGAAACCATCAGAATGCAAAAGGTGGCAGTTTTAATTCTCATAATGTTTCAAATGGGACATATGTTCCTGGAAATGTTGGTTCTTCTACTAGGGATGCTGGCGCATCAGATGCAGGAGCTGGATTATCTGCAGACGCTTACCGATGTGGGCATGAAATAACTGTTACTGGGGATAATGTGCCTCCTCCTTTTACATCATTTGGGTCTACTGGCTTTCCATCCGAGATTCTTAGAGAGgTACACAACGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATTATAGCCATTGCTAAAACTGGCTCAGGTAAAACCTTGGGGTATTTAATCCCTGGATTTATTCACCTCAAGCGCTGCGGTAATGACTCCAAATTGGGTCCCACTGTATTGGTGTTGTCACCAACGAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAGTCTTCAAGAATTTCTTGTGTGTGTTTGTATGGCGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCCAATGTTGTGGTTGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGAAGAATCAGCCTTAATCAGGTATCTTACCTTGTGCTAGATGAGGCTGACCGGATGCTGGATATGGGTTTTGAACCTCAAATCAGAAAAATTGTGAAAGAAGTGCCTACACGTCGGCAAACTCTTATGTTCACTGCAACTTGGCCGAAGGAGGTTAGGAAAATTGCGGCTGATCTGCTGGTCAATCCTGTCCAGGTCAACATGGGCAATGTGGATGAACTTGTTGCTAACAAGTCCATCACTCAGCATGTTGAAGTAGTGCCACCATTGGAGAAACACAGACGATTGGAGCAGATATTGCGGTCACAAGATCCAGGAtcaaagataattattttttgttctacCAAGAAAATGTGTGATCAACTTGCTCGGAATCTAACACGTCAGTTTGGAGCTGCTGTTATTCATGGGGATAAATCCCAGGATGAGAGGGATCGTGTGTTGAGTCAGTTTCGAACTGGGAGGTCGCCAGTTCTTGTAGCTACGGATGTTGCAGCTCGAGGATTGGACATCAAAGACATTAGgGCGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCAGGAGCTACAGGCTTAGCTTACACATTCTTTGGAGACCAGGATGCTAAACATGCCTCGGATCTCATCAAGGTCTTGGAAGGTGCAAACCAAAGAGTCCCTACAGAACTTCATGATATGGCTTCACGCAGTGGTGGTATGAACAGATCCAGACGGTGGGGTTCTGGACCTTCTGGTGGATATGGTGGAAGGGGCGGACGAGGAACTGCTCCTGGCCGAGGTGGAGGTCGTGGATTTGACTATGATTTACAGAGGAATGATCGCGGTGGCTATGGACAAGATGTTAATTCCCGTAGCAAGTATGATAGAGGATCAGGATGGGGTGATCGTAGTAAAAGTTTCAGTCGTGACCGCAGCCGGAGTCGTAGTCCTGATAGGCATGGCAAGGCTCCACCACAACAGCATTCCTCGGGTTACAGTTTTCACAATGCTATGATGGAACGTGGTGGAGTTTTCATCAGTCCATGGTGGCACGATGCCAATCTTCCCCTCCGGCCCACCAGCGTACACGAAGGAGTTCACCATCCTCCCCTGGATATGATGGAGAAGAGGAGGAAGGGATA 4034 0.438 MQLNICNSRVREYGKICRSCFVLHVLLFFVPKYIIILLRHSLGSASELENLCHCKAESLKMDKDDSSLESENFDWNTEDELEVENFQSSSSCLTVPNGDGITGSAEGISSAGSSNSKIYDHFVGMGFSEKVVSRVIQENGEDNVDLILETLLTYSVIETPPRQPQQIESDPCSSDYEGSFLDDFSDIDSISENEGITNSVSENDGKLLSLVNMGYEVEEASIALERCGPDSSLAELIDFICAAQVAKSSDALIPKEKPRINNLPKPKKRSYYKEEVLGRKKPRAPLNEDDEILRLPKPMIGFGIPTDSSSITHRTLPEAAVGPPYFYYENVALAPKGVWQTISRFLYDVEPEFVDSKHFCAAARKRGYIHNLPIENRFPLLPLPPHTIHEALPLTRKWWPAWDERTKLNCLQTCIASARLTDRIRKAIENYDRDPPLHVQKKVIDECRKWNLVWVGRNKAAPLEPDEVELLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSALKELYPDGINMLSLFSGIGGAEVALHRLGIPLKTVVAVEISEVNRNIVRSWWEQTNQKGNLIDVDDIRHLDGDRLEQLMNTFGAFDLVIGGSPCNNLTGSNRYTRDGLEETDTSHPFFLPQKARLSNKICILTYFLPVLPSVRNNRYRERKRNSVESTSTSRFYSPLNPQGDFVSRLLLPTPLQWPQLQLHLQSVHDMPLQTQHFQNHGEDLLMVQQSAQVVRSHRSDLNDRYDRNNIGGSNLDAGSRNHQNAKGGSFNSHNVSNGTYVPGNVGSSTRDAGASDAGAGLSADAYRCGHEITVTGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIIAIAKTGSGKTLGYLIPGFIHLKRCGNDSKLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGANVVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRKIAADLLVNPVQVNMGNVDELVANKSITQHVEVVPPLEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAAVIHGDKSQDERDRVLSQFRTGRSPVLVATDVAARGLDIKDIRAVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKVLEGANQRVPTELHDMASRSGGMNRSRRWGSGPSGGYGGRGGRGTAPGRGGGRGFDYDLQRNDRGGYGQDVNSRSKYDRGSGWGDRSKSFSRDRSRSRSPDRHGKAPPQQHSSGYSFHNAMMERGGVFISPWWHDANLPLRPTSVHEGVHHPPLDMMEKRRKG 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01728 1344 Pfam C-5 cytosine-specific DNA methylase 518 604 IPR001525 GO:0008168
Bva04g01728 1344 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 971 979 IPR000629 -
Bva04g01728 1344 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 712 1258 - -
Bva04g01728 1344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1054 1198 IPR001650 -
Bva04g01728 1344 Gene3D - 99 155 - -
Bva04g01728 1344 MobiDBLite consensus disorder prediction 734 756 - -
Bva04g01728 1344 Pfam Helicase conserved C-terminal domain 1051 1159 IPR001650 -
Bva04g01728 1344 Gene3D Vaccinia Virus protein VP39 508 661 IPR029063 -
Bva04g01728 1344 Gene3D Vaccinia Virus protein VP39 309 396 IPR029063 -
Bva04g01728 1344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 321 514 IPR029063 -
Bva04g01728 1344 Gene3D - 797 1029 IPR027417 -
Bva04g01728 1344 MobiDBLite consensus disorder prediction 1191 1297 - -
Bva04g01728 1344 SMART ultradead3 839 1042 IPR014001 -
Bva04g01728 1344 Gene3D - 1030 1201 IPR027417 -
Bva04g01728 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 1175 IPR027417 -
Bva04g01728 1344 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 712 1258 - -
Bva04g01728 1344 Pfam DEAD/DEAH box helicase 844 1014 IPR011545 GO:0003676|GO:0005524
Bva04g01728 1344 MobiDBLite consensus disorder prediction 1260 1286 - -
Bva04g01728 1344 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 312 642 IPR030380 GO:0006306
Bva04g01728 1344 SMART helicmild6 1079 1159 IPR001650 -
Bva04g01728 1344 CDD SF2_C_DEAD 1039 1168 - -
Bva04g01728 1344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 851 1025 IPR014001 -
Bva04g01728 1344 MobiDBLite consensus disorder prediction 742 756 - -
Bva04g01728 1344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 517 618 IPR029063 -
Bva04g01728 1344 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 820 848 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01728 Bva-Chr4 18362633 18376458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01728 818 1197 Eukaryotic Initiation Factors Gene Family AT3G19760 35.248 2.43e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01728 K12823 - gmx:100816455 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01728 04 18362633 18376458 Bva04g01728 04 18362633 18376458 ECH