Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01727 ATGGCTTCAGCTGTTGGAAAACATGGTGGTGATTCCATGATGGTTGATAAGCTCCCTGAGGAGATCAATGAAATGAAGATTAAGGATGAAAAGGAAATGGAGGCAGCAATGGTAGATGGGAATGGGACTGAAACTGGTCACATTATTGTCACAACAATAGGTGGTAGAAATGGTGAACCCAAACAGACCATTAGTTACATGGCTGAGCGTGTGGTCGGACAAGGCTCGTTTGGTATTGTGTTTCAGGCCAAGTGTCTTGAAAGTGGAGAAACTGTAGCAATCAAGAAGGTTTTGCAGGATAAAAGGTATAAGAATCGTGAATTGCAGACAATGCGCCTTCTTGATCATCCTAACGTTGTATCGCTCAAACACTGCTTCTTTTCTACTACTGACAAAGATGAACTCTATCTCAATTTGGTGCTTGAGTATGTACCTGAGACCGTATACCGTGTGGTGAAACACTATAGCAAGGCAAATCAGCGAATGCCACTGATATATGTTAAACTCTACACTTACCAGATTTGTCGAGCTCTGGCTTATATTCATGGATGTGTTAGAGTATGCCACAGGGACATTAAGCCGCAGAATCTACTGGTTAATCCCCATACTCATCAGGTCAAGCTTTGTGATTTTGGAAGTGCTAAAGTTCTGGTTAAAGGGGAGcctaatatatcatatatatgctCACGCTACTATCGAGCGCCGGAACTCATTTTTGGGGCAACTGAATACACTACTGCAATTGACATGTGGTCTGTGGGTTGTGTCCTCGCTGAGATGCTCTTGGGACAGCCTCTATTCCCAGGAGAAAGTGGAGTTGATCAACTTGTTGAGATTATAAAGGTACTTGGGACTCCAACTCGTGAGGAAATTAAATGCATGAATCCAAACTATACAGAGTTTAAGTTCCCTCAAATCAAGGCTCACCCTTGGCATAAGATATTCCATAAGCGTATGCCCCCAGAAGCAGTAGACCTTGTTTCAAGACTCCTTCAGTATTCCCCAAACTTAAGATGCACTGCTttAGAAGCATGTGTCCACCCATTTTTCGACGAACTACGCGATCCCAACACCCGTCTCCCCAATGGGCGCCCTTTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGGAGCAACGTTGGAGCTGGTATGCAAACTTGTTCCAGAACATGCTCGCAAACAATGCCCATCCCTTAATTTCTA 1208 0.4321 MASAVGKHGGDSMMVDKLPEEINEMKIKDEKEMEAAMVDGNGTETGHIIVTTIGGRNGEPKQTISYMAERVVGQGSFGIVFQAKCLESGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVRVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAEMLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACVHPFFDELRDPNTRLPNGRPLPPLFNFKPQELKGATLELVCKLVPEHARKQCPSLNF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01727 402 CDD STKc_GSK3 61 353 IPR039192 -
Bva04g01727 402 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 398 - -
Bva04g01727 402 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Bva04g01727 402 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01727 402 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 5 398 - -
Bva04g01727 402 Pfam Protein kinase domain 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01727 402 Gene3D Transferase(Phosphotransferase) domain 1 146 394 - -
Bva04g01727 402 SMART serkin_6 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01727 402 SUPERFAMILY Protein kinase-like (PK-like) 65 374 IPR011009 -
Bva04g01727 402 Gene3D Phosphorylase Kinase; domain 1 50 145 - -
Bva04g01727 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01727 Bva-Chr4 18356244 18360923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01727 66 392 MAP Kinase Gene Family AT1G73670 36.628 5.28e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Bva04g01727 Pkinase 7.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01727 - - jre:108992860 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01727 04 18356244 18360923 Bva04g01727 04 18356244 18360923 ECH