Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01676 atgaagagagaaagagagattgatAGCTTAGCCATGGCCAATTGTTTGATGTTACTATCCCGTGAAGGAGGCCAATTTGAGGCATCATATTCTAAGTCTTCAAGCCACCGTGTCTTTGAGTGCAAGACCTGCAACCGGCAGTTTCCGTCGTTTCAGGCCCTCGGTGGCCACCGCGCCAGCCACAAGAAGCCGCGGCTGATGGCCGGAGAAGGGTCACAGGAACTCGAGGGTCATGAGTTGGGTCGTCATGGCTTGCCGGTGAAACCTAAAACACACGAGTGCTCCATTTGTGGGTTGGAGTTTGCAATAGGGCAAGCTTTGGGAGGCCACATGAGGAGGCATAGAGCAGCAGCTTTGAATGAAAACGTGAATAACTCTAGTGCTTCTTCTATTACTATGAGTAATAGCAGTGGTGGTAGTTTTGATTCATCTTCACCTGCCAAGAAGAAAGTTAATACAAAGAGAGTTTTGTTTCTGGATTTGAATTTGACACCATTAGAGAATGATTTGCAGATTTTGAGGATTGGAAAGGCAACTCCTTTGGTAGATTGCTTCTATTG 560 0.45 MKREREIDSLAMANCLMLLSREGGQFEASYSKSSSHRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGEGSQELEGHELGRHGLPVKPKTHECSICGLEFAIGQALGGHMRRHRAAALNENVNNSSASSITMSNSSGGSFDSSSPAKKKVNTKRVLFLDLNLTPLENDLQILRIGKATPLVDCFY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01676 186 SMART c2h2final6 92 114 IPR013087 -
Bva04g01676 186 SMART c2h2final6 39 61 IPR013087 -
Bva04g01676 186 Pfam C2H2-type zinc finger 92 116 - -
Bva04g01676 186 Pfam C2H2-type zinc finger 38 64 - -
Bva04g01676 186 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Bva04g01676 186 SUPERFAMILY beta-beta-alpha zinc fingers 37 114 IPR036236 -
Bva04g01676 186 PANTHER ZINC FINGER PROTEIN ZAT12 11 185 - -
Bva04g01676 186 Gene3D Classic Zinc Finger 20 118 - -
Bva04g01676 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Bva04g01676 186 MobiDBLite consensus disorder prediction 124 147 - -
Bva04g01676 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Bva04g01676 186 PANTHER ZINC FINGER PROTEIN ZAT5 11 185 - -
Bva04g01676 186 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01676 Bva-Chr4 17868491 17869442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01676 12 177 C2H2 Transcription Factor Family AT2G28710 47.619 1.87e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g01676 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01676 - - gmx:100500371 243.432