Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01673 ATGGTTCTATCGAACACAAAACTGAAACAGAAGCTCAGAGCGGAGCTAGCCGAATCCGCCGCAAAATCGGTGCCACAAAACAACCCAGACCCAAATAGCTCTCTGAAAAAGCTTCTAGACTCGGATTCACGAAGACCCAGATTatcaaagagagaaaaacGCCGGTCTTTGAAGCCCTCGGCGGCTGCACAAAACGACGGCGTTGGTGCCACCGCCGAAGATgagggaacgaagaaagaaggGTTGGAGGATTTAGgtaacaagaagaagaacaaaaagagaaagagaaaagtagaGGAAAATGTGGAAAATGGAATTGAGAAGGAagcaaagaaatcaaagaagaaagatcagAATAAGAAgcagaagaggaaaaagaagcagaaaaagaccaaaacagaagaagaaaagagtacTAATCCTGTAGTTGAAAACCCAAAAGTGAAAGAGTTAGACATGAACTATAGCAGCAAAGAAAATGCTGAGGTTTCTACAAAAGTTTATGTTGGAGGGATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAGGCTGTGGCACCATAACTGAGGTTGATTGCATGACTTTTCCTGAGAGTGGGAAGTTTAGAGGTATTGCCCTTATCAGTTTTAAGACTGAAGCTGCAGCAAAACGAGCTTTGGCTCTTGATGGAGCTGACATGGGTGGACTGTTTCTTAGAATTCAACCATATAAGGCAATTCGAACTGCTAAAACCTCAGATTTTTCCCCAGAAATGGTGGATGGCTACAACAGAATCTATATGGGCAATTTGTCATGGGATATAACTGAGGATGAACTGAAGAAATTCTTCTCAGGTTGCGGTATATCGTTGATACGATTTGGCATGGACAAGGAGACCGGGGAATTCCGAGGATATGCCCATGTTGATTTTGCTGATAGTCAGTCCCTAAAAACGGCACTTACCTTGGATCAAAAGGTAGTGTTTGGGAGACCTGTTAGGATAAGTTGTGCAGTTCCTTTGAAGAAGGGAAGCCTTGCAAATTCTGTGCCTTCAGCTGCAAGTAAGGGAGTCGAAGCTGATGCCGGGAAATCAAGTTCCGGTGGAGGGAAGATGAGGAGAAGGACATGCTTTGATTGTGGTGAAAAAGGGCATATTTCTTCAGCTTGTCCTAATccgaagaaacaaaatatagatTCTACAAGAAGTTA 1199 0.3728 MVLSNTKLKQKLRAELAESAAKSVPQNNPDPNSSLKKLLDSDSRRPRLSKREKRRSLKPSAAAQNDGVGATAEDEGTKKEGLEDLGNKKKNKKRKRKVEENVENGIEKEAKKSKKKDQNKKQKRKKKQKKTKTEEEKSTNPVVENPKVKELDMNYSSKENAEVSTKVYVGGIPYYSTEDDIRSYFEGCGTITEVDCMTFPESGKFRGIALISFKTEAAAKRALALDGADMGGLFLRIQPYKAIRTAKTSDFSPEMVDGYNRIYMGNLSWDITEDELKKFFSGCGISLIRFGMDKETGEFRGYAHVDFADSQSLKTALTLDQKVVFGRPVRISCAVPLKKGSLANSVPSAASKGVEADAGKSSSGGGKMRRRTCFDCGEKGHISSACPNPKKQNIDSTRS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01673 399 SUPERFAMILY Retrovirus zinc finger-like domains 359 392 IPR036875 GO:0003676|GO:0008270
Bva04g01673 399 Coils Coil 112 136 - -
Bva04g01673 399 Gene3D - 252 341 IPR012677 -
Bva04g01673 399 MobiDBLite consensus disorder prediction 21 36 - -
Bva04g01673 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 329 IPR000504 GO:0003723
Bva04g01673 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Bva04g01673 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Bva04g01673 399 SMART rrm1_1 261 332 IPR000504 GO:0003723
Bva04g01673 399 SMART rrm1_1 166 238 IPR000504 GO:0003723
Bva04g01673 399 SMART c2hcfinal6 372 388 IPR001878 GO:0003676|GO:0008270
Bva04g01673 399 MobiDBLite consensus disorder prediction 96 114 - -
Bva04g01673 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Bva04g01673 399 MobiDBLite consensus disorder prediction 129 143 - -
Bva04g01673 399 MobiDBLite consensus disorder prediction 72 88 - -
Bva04g01673 399 Gene3D - 350 398 - -
Bva04g01673 399 MobiDBLite consensus disorder prediction 378 399 - -
Bva04g01673 399 Gene3D - 103 251 IPR012677 -
Bva04g01673 399 SUPERFAMILY RNA-binding domain, RBD 253 341 IPR035979 GO:0003676
Bva04g01673 399 CDD RRM2_PHIP1 261 332 IPR034362 -
Bva04g01673 399 ProSiteProfiles Zinc finger CCHC-type profile. 373 388 IPR001878 GO:0003676|GO:0008270
Bva04g01673 399 MobiDBLite consensus disorder prediction 1 144 - -
Bva04g01673 399 Pfam Zinc knuckle 371 388 IPR001878 GO:0003676|GO:0008270
Bva04g01673 399 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 66 394 - -
Bva04g01673 399 Coils Coil 82 102 - -
Bva04g01673 399 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 66 394 - -
Bva04g01673 399 SUPERFAMILY RNA-binding domain, RBD 163 241 IPR035979 GO:0003676
Bva04g01673 399 CDD RRM1_PHIP1 167 238 IPR034361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01673 Bva-Chr4 17829409 17831618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01673 164 334 Eukaryotic Initiation Factors Gene Family AT3G16380 27.778 1.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01673 - - jre:109003035 405.601