Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01640 ATGGACCGATTCATTCCGAATCGCGAAGCCATGGACATGGATTATGCACGTACGGTAATGTCCCACATGGGGGAATTGTATTTCCCGCCACGGAATCGCTATCAGAGACTTCTCTCTACGGCTCTTGGACTCGATCATTCTCGGATTTTGGTCTTTGGTGAACGCCGATTTGCTTCCGTCGATCCCCTTCGTGATGAAGGGTTTGAATCGTTGATTTCTAGTCGCCGGTGTCAATTTCCTTCGGAACCCGAGAAGATATTAGATGCCCCGAACCTGTTGGTTGATGATGCTTTTCATGTACTTGATTGGGGAAATAACGATATAATCGCCGTTGCATTCGGAGATACCCTATATGGTTAtgatttcaattcaaaaactAGTTCAAAGATTGTTACAGTTGAAGGAGAAGTACCCATTACTGGGGTCAAATGGGCTTCCGATGGTGAACGCATAGCTATTAGACTGTACAATGGGGAGGTTCTCTTATGGGATGTATCAGCTGAGCGAAAGCTCACCGCCATTGGAATTGGCCAGGGTAAATCTGGCTCTTTGGCATGGAATCATTCTGCTATGAATACCCTTACGGTAGGGAGGGATGATGGAAAGATCGTTGATTACAATTTTGGTTCGAATAGGATTGTGGCTAGCTACGGTCCAAGTCATCGAGGAGGGGTTCTTAGTTTCAAATGGTCACCCGGGGGTAATAGATTGCTTAGTGGTGGGGCAGATTATACTGCCTACATTTGGGATAGAGCCAAACCTTCTGCATTTTGCACAAAATTTACTGATCACCAGGGTGCAGTCAGAGGCCTTGATTGGTGCCCCTTTGAACATGGCTTGGTGGTGTCTGGTGGACATGAtggtttcatcaaaatttggTCTTCTTACACCGGCAAGTGTTTGAAATCTGAGAATACTGGTTCGGAGGTCTTATCTTTGATGTGGGCTAAATGTCAAGATGATGAATTGATCAGCTCTCACGGCTTCCCGGGAAATGAGCTTGCAGTTTGGAAATATCCGTCTATGGAGAATATTGTAGAATTTGAACATCATCGTTCCAGGTTGCTGTATATAGCCAGTAGTCCTGATGGTTGCTTTCTGGCATCTGCGTCAGGAGAATCTGCGCCAAATGCAGAAGATGATAAGTTAATGCTTTGGAACATGAATTGCAAAGTGGAAAGAAGCAGTACTAACCATCTGTTTTGCAATCAAGATATGaGCTTCCTGGTCATCACTGGGGGAAGTCAGCAGACTCCAGTGATACAGAGCAGCCACCGGGCTAGCCTTCCACCTGAGCTTCTTAGGGATGTTATCAAAAGGTTGGAAGCGAGAGCACATCGCTTCCTCATAAGCACGCGGTTCAATGCGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATCTTTAGCAGTCCTGAGTTCAGTGGAAAGAttactttcctttttccttaaaGCAGGATATAGTGATGGACCCATACAGTGTTTCATCAAGAGAGACAAATCTAAGCTCAAATACCACCTTTGCCTTAGTCCTGAAACGTATATGCCCCTCATTGTATTCTGTTATGTGAAATGCTGCATGACTTCAAATGTTGTTTTTCCTTA 1610 0.4385 MDRFIPNREAMDMDYARTVMSHMGELYFPPRNRYQRLLSTALGLDHSRILVFGERRFASVDPLRDEGFESLISSRRCQFPSEPEKILDAPNLLVDDAFHVLDWGNNDIIAVAFGDTLYGYDFNSKTSSKIVTVEGEVPITGVKWASDGERIAIRLYNGEVLLWDVSAERKLTAIGIGQGKSGSLAWNHSAMNTLTVGRDDGKIVDYNFGSNRIVASYGPSHRGGVLSFKWSPGGNRLLSGGADYTAYIWDRAKPSAFCTKFTDHQGAVRGLDWCPFEHGLVVSGGHDGFIKIWSSYTGKCLKSENTGSEVLSLMWAKCQDDELISSHGFPGNELAVWKYPSMENIVEFEHHRSRLLYIASSPDGCFLASASGESAPNAEDDKLMLWNMNCKVERSSTNHLFCNQDMSFLVITGGSQQTPVIQSSHRASLPPELLRDVIKRLEARAHRFLISTRFNALLCASPGEKCAKKSLAVLSSVERLLSFFLKAGYSDGPIQCFIKRDKSKLKYHLCLSPETYMPLIVFCYVKCCMTSNVVFP 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01640 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Bva04g01640 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 303 IPR001680 GO:0005515
Bva04g01640 536 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 392 - -
Bva04g01640 536 SUPERFAMILY WD40 repeat-like 102 388 IPR036322 GO:0005515
Bva04g01640 536 Pfam WD domain, G-beta repeat 220 250 IPR001680 GO:0005515
Bva04g01640 536 Pfam WD domain, G-beta repeat 345 387 IPR001680 GO:0005515
Bva04g01640 536 SMART WD40_4 341 387 IPR001680 GO:0005515
Bva04g01640 536 SMART WD40_4 210 250 IPR001680 GO:0005515
Bva04g01640 536 SMART WD40_4 254 294 IPR001680 GO:0005515
Bva04g01640 536 SMART WD40_4 126 164 IPR001680 GO:0005515
Bva04g01640 536 Pfam Anaphase-promoting complex subunit 4 WD40 domain 262 316 IPR024977 -
Bva04g01640 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 250 IPR001680 GO:0005515
Bva04g01640 536 Gene3D - 48 418 IPR015943 GO:0005515
Bva04g01640 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 250 - -
Bva04g01640 536 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 392 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01640 Bva-Chr4 17557302 17561074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01640 416 513 TUB Transcription Factor Family AT1G76900 41.667 9.33e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01640 K03363 - gmx:100783578 293.893