Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01639 ATGTCCTTCCGCAGTATAGTTCGAGATGTAAGGGATGGATTTGGAAGCTTGTCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGTCATCACAGGGGGAAGTCTTGTAGTTCAGTCCACGAGTTGCATGAACCGCCTCCAGTGATTCAGAACAGCCGTTGGGCTAGTCTTCCACCTGAGCTTCTTAGGGATGTTATCAAAAGGTTGGAAGCAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTGCATGTGCGGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTCTGTGGAAAAATTACTTTCCCTGTCTCCTTAAAGCAGCCTGGATATAGGGATGGGCCTATACAGTGTTTCATCAAGAGAGACAAATCTAAGCTCACATACCGCCTTTTCCTTTGCCTTAGTCCTGCCCTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACCCGAAGGACAACTTGCACAGAGTATATCATATCAATGGATGCAGATAATATATCAAGATCTAGCAACACTTATATAGGAAAACTGAGGTCAAATTTTCTTGGCACTAAATTCATAATCTATGATACACAGCCGCCCTATAATAATGCTCAGCTGCCTCCACGTGGCCGTAGCCGTAGGTTCTATTCGAAAAAGGTTTCTCCAAAGGTTCCCAGTGGGAGCTATAACATTGCCCAAGTCACCTATGAGCTGAATGTGCTCGGTACAAGGGGGCCACGGAGGATGCACTGCACCATGTACTCGATCCCTGCATCATGTCTTGAGCCCGGTGGCTTGGTCCCAGGCCAGCCGGAGCTTCTTCCTCGTGCTCTTGAGGACTCATTCCGGAGCATCTCCTTCTCAAAATCAATCGACAATTCAACGGAGTTTAGCAGCTCTAGATTCTCAGACATATTTGGGCCCGACAACGAGGATGAAGAGGGAAAGGAGAGACCACTGGTTCTCAAGAACAAGGCACCAAGATGGCACGAACAGTTGCAATGTTGGTGCCTCAACTTCAGGGGTCGCGTGACGGTTGCGTCTGTCAAGAACTTTCAACTGATCACTGCAACACCGGCTGCAGCCGGTGCTCCAACACCATCACAGCCAACGCaggcttcttcttcttcttcttcttcttcttctgatcATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGGAAGGATATGTTTACGATGGACTATCGATATCCCCTGTCGGCATTCCAGGCATTTGCCATCTGCTTGACCAGCTTTGACACAAAACTGGCTTGTGAATA 1301 0.4673 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSCSSVHELHEPPPVIQNSRWASLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLPPRGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPASCLEPGGLVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIFGPDNEDEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLITATPAAAGAPTPSQPTQASSSSSSSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01639 433 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bva04g01639 433 SUPERFAMILY F-box domain 42 96 IPR036047 GO:0005515
Bva04g01639 433 MobiDBLite consensus disorder prediction 300 325 - -
Bva04g01639 433 MobiDBLite consensus disorder prediction 368 390 - -
Bva04g01639 433 Pfam Tub family 114 428 IPR000007 -
Bva04g01639 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
Bva04g01639 433 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 411 433 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bva04g01639 433 PRINTS Tubby superfamily signature 390 409 IPR000007 -
Bva04g01639 433 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 433 - -
Bva04g01639 433 MobiDBLite consensus disorder prediction 367 390 - -
Bva04g01639 433 Gene3D - 48 101 - -
Bva04g01639 433 Gene3D Tubby Protein; Chain A 110 433 IPR025659 -
Bva04g01639 433 SUPERFAMILY Tubby C-terminal domain-like 102 433 IPR025659 -
Bva04g01639 433 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Bva04g01639 433 PANTHER TUBBY-RELATED 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01639 Bva-Chr4 17550295 17555104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01639 1 433 TUB Transcription Factor Family AT1G76900 70.370 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva04g01639 Tub 9.3e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01639 K19600 - qsu:111992792 754.592