LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g01626	ATGGTGAGAGATAGTAACAAGCTATATGTCACCGTTCCGAGCCTCTTCCGGTGCCCTATTTCCATGGACGTGATGAGGTCTCCGGTGAGCCTCTGTACCGGCGTCACATACGATCGCTCCAGCATCCAGAACTGGCTTGATTCCGGTCACAACACGTGTCCCGCCACGAAGCAAGTCCTTCCCTCTAAGGATGTCATCCCCAACCTTACCGTTCACCGCCTCATCAACCTTTGGCTCCGCTCCGGCGACCGCTCATTGGCCTCATCGTCGTCTCCGGCGGCGTCTCATTCTCTTTCCGCTGTCTCAATCGAGGATGTTCGGAATCTAATCCGCAGAATGGGAAACGACAATGAAGATATCGCCATCTTGCTTCCGAAGATTCTGGAATTCGCAAGTTATTCAGACGAGAATAGGCGGTTGGTTGCGAATTTTCCTGGTTTTGATTCCGAAGTGGTTCGGATTTTCAGCAAGAATCGCTCTGTGATTGGCATTCTGGAAACGGCGATTAGAGTTCTGGGTTTGATTACTAGAGAAAACGAAGCCGAAAAACGAGTTCGCGCTCTGATTTTTGACAGCACTCGCGATTGCctatcttcgttggtttcCATTCTGCAAAACGGCGCCGTAAGCTCGAAGATCGAAACGCTGAGGTTTTTGGAATCATTAGCCGGAGACGTCCAATCGAAACGTTCAATCGCCGAAACGCCAGACCTATTATCTGTACAACTAAACCTACTCCGGTCCGAAAGCAAAATCAACGCAGAACTACACGACGCCGTTTTGTCGTGCTTGATCGCCCTTTCCGCCACTCAGTCAACCAAAATGCAACTCATCCGGGTCGGACTAGTTCGGGTTTTATCCGATATCCTCCAGAACCCGACCTGCAGCAAATCAAGGACCGAGAAGTGTCTGAAACTCCTGGCAACGGTTTCTACCTTTGCAGAGGGAAGGTCGGCGATAAGCGAAGAGTGGCAGTGCGTGGAGGCGGTAGTGGAGAAGCTGGTGAAGGTGACGAACGCGGCGGTTGAGGACGCGGTGGCGGTGCTGTGGAATATTTGCTGCTTGTCGAGGAATGTGAAGGTGCAGGAGGAGGTGGCGAAGGGAAATGGCGTAACGAAGATACTTCTGGTGCTGCAGAGAGACTGTGAGGAGCACGTGAAGAAGATGtgtagagatttggtcaaggtTCTTAGGGCAGTGTGGAAGGTTGATTTGGGGAGCTATGAGACCAAAACCACTCACATCAAACCTTGCTG	1256	0.5016	MVRDSNKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQNWLDSGHNTCPATKQVLPSKDVIPNLTVHRLINLWLRSGDRSLASSSSPAASHSLSAVSIEDVRNLIRRMGNDNEDIAILLPKILEFASYSDENRRLVANFPGFDSEVVRIFSKNRSVIGILETAIRVLGLITRENEAEKRVRALIFDSTRDCLSSLVSILQNGAVSSKIETLRFLESLAGDVQSKRSIAETPDLLSVQLNLLRSESKINAELHDAVLSCLIALSATQSTKMQLIRVGLVRVLSDILQNPTCSKSRTEKCLKLLATVSTFAEGRSAISEEWQCVEAVVEKLVKVTNAAVEDAVAVLWNICCLSRNVKVQEEVAKGNGVTKILLVLQRDCEEHVKKMCRDLVKVLRAVWKVDLGSYETKTTHIKPC	418

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g01626	418	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	3	87	IPR013083	-
	Bva04g01626	418	Gene3D	-	88	402	IPR011989	-
	Bva04g01626	418	ProSiteProfiles	U-box domain profile.	11	85	IPR003613	GO:0004842\|GO:0016567
	Bva04g01626	418	SUPERFAMILY	ARM repeat	182	396	IPR016024	-
	Bva04g01626	418	Pfam	U-box domain	12	81	IPR003613	GO:0004842\|GO:0016567
	Bva04g01626	418	PANTHER	WDSAM1 PROTEIN	6	418	IPR045185	GO:0061630
	Bva04g01626	418	CDD	RING-Ubox_PUB	16	58	IPR045210	-
	Bva04g01626	418	SUPERFAMILY	RING/U-box	3	81	-	-
	Bva04g01626	418	SMART	Ubox_2	15	78	IPR003613	GO:0004842\|GO:0016567
	Bva04g01626	418	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	6	418	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g01626	Bva-Chr4	17331548	17333124	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g01626	5	417	U-box Gene Family	AT5G09800	43.541	1.55e-95	291

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g01626	-		-	gmx:100786235	416.772

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