Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01626 ATGGTGAGAGATAGTAACAAGCTATATGTCACCGTTCCGAGCCTCTTCCGGTGCCCTATTTCCATGGACGTGATGAGGTCTCCGGTGAGCCTCTGTACCGGCGTCACATACGATCGCTCCAGCATCCAGAACTGGCTTGATTCCGGTCACAACACGTGTCCCGCCACGAAGCAAGTCCTTCCCTCTAAGGATGTCATCCCCAACCTTACCGTTCACCGCCTCATCAACCTTTGGCTCCGCTCCGGCGACCGCTCATTGGCCTCATCGTCGTCTCCGGCGGCGTCTCATTCTCTTTCCGCTGTCTCAATCGAGGATGTTCGGAATCTAATCCGCAGAATGGGAAACGACAATGAAGATATCGCCATCTTGCTTCCGAAGATTCTGGAATTCGCAAGTTATTCAGACGAGAATAGGCGGTTGGTTGCGAATTTTCCTGGTTTTGATTCCGAAGTGGTTCGGATTTTCAGCAAGAATCGCTCTGTGATTGGCATTCTGGAAACGGCGATTAGAGTTCTGGGTTTGATTACTAGAGAAAACGAAGCCGAAAAACGAGTTCGCGCTCTGATTTTTGACAGCACTCGCGATTGCctatcttcgttggtttcCATTCTGCAAAACGGCGCCGTAAGCTCGAAGATCGAAACGCTGAGGTTTTTGGAATCATTAGCCGGAGACGTCCAATCGAAACGTTCAATCGCCGAAACGCCAGACCTATTATCTGTACAACTAAACCTACTCCGGTCCGAAAGCAAAATCAACGCAGAACTACACGACGCCGTTTTGTCGTGCTTGATCGCCCTTTCCGCCACTCAGTCAACCAAAATGCAACTCATCCGGGTCGGACTAGTTCGGGTTTTATCCGATATCCTCCAGAACCCGACCTGCAGCAAATCAAGGACCGAGAAGTGTCTGAAACTCCTGGCAACGGTTTCTACCTTTGCAGAGGGAAGGTCGGCGATAAGCGAAGAGTGGCAGTGCGTGGAGGCGGTAGTGGAGAAGCTGGTGAAGGTGACGAACGCGGCGGTTGAGGACGCGGTGGCGGTGCTGTGGAATATTTGCTGCTTGTCGAGGAATGTGAAGGTGCAGGAGGAGGTGGCGAAGGGAAATGGCGTAACGAAGATACTTCTGGTGCTGCAGAGAGACTGTGAGGAGCACGTGAAGAAGATGtgtagagatttggtcaaggtTCTTAGGGCAGTGTGGAAGGTTGATTTGGGGAGCTATGAGACCAAAACCACTCACATCAAACCTTGCTG 1256 0.5016 MVRDSNKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQNWLDSGHNTCPATKQVLPSKDVIPNLTVHRLINLWLRSGDRSLASSSSPAASHSLSAVSIEDVRNLIRRMGNDNEDIAILLPKILEFASYSDENRRLVANFPGFDSEVVRIFSKNRSVIGILETAIRVLGLITRENEAEKRVRALIFDSTRDCLSSLVSILQNGAVSSKIETLRFLESLAGDVQSKRSIAETPDLLSVQLNLLRSESKINAELHDAVLSCLIALSATQSTKMQLIRVGLVRVLSDILQNPTCSKSRTEKCLKLLATVSTFAEGRSAISEEWQCVEAVVEKLVKVTNAAVEDAVAVLWNICCLSRNVKVQEEVAKGNGVTKILLVLQRDCEEHVKKMCRDLVKVLRAVWKVDLGSYETKTTHIKPC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01626 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Bva04g01626 418 Gene3D - 88 402 IPR011989 -
Bva04g01626 418 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Bva04g01626 418 SUPERFAMILY ARM repeat 182 396 IPR016024 -
Bva04g01626 418 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Bva04g01626 418 PANTHER WDSAM1 PROTEIN 6 418 IPR045185 GO:0061630
Bva04g01626 418 CDD RING-Ubox_PUB 16 58 IPR045210 -
Bva04g01626 418 SUPERFAMILY RING/U-box 3 81 - -
Bva04g01626 418 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Bva04g01626 418 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01626 Bva-Chr4 17331548 17333124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01626 5 417 U-box Gene Family AT5G09800 43.541 1.55e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01626 - - gmx:100786235 416.772